SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7328

Length: 1441 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7328

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ketol-acid reductoisomerase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9S999_RICCO	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	ketol-acid reductoisomerase	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	94%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	94%
Blast2go	copper ion binding	GO:0005507	Molecular Function	94%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	94%
Blast2go	NADPH binding	GO:0070402	Molecular Function	94%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	94%
Blast2go	catalytic activity	GO:0003824	Molecular Function	94%
Blast2go	cell wall	GO:0005618	Cellular Component	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	94%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	94%
Blast2go	apoplast	GO:0048046	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	Acetohydroxy acid isomeroreductase C-terminal	IPR000506	-	94%
Blast2go	6-phosphogluconate dehydrogenase, C-terminal-like	IPR008927	-	94%
Blast2go	Acetohydroxy acid isomeroreductase	IPR013023	-	94%
Blast2go	Dehydrogenase, multihelical	IPR013328	-	94%
Blast2go	NAD(P)-binding domain	IPR016040	-	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR30

Fln msg: Overlapping hits, possible frame ERROR between 559 and 456, your sequence is shorter than subject: 214 - 467

Fln protein: RRLYVQGQEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEDEYKSDIFGERGILLGAVHGIVEALFRRYTERGMDDELAYKNTVEGITGIISKTISTKGLLAIYNSLNEKGRRDFEMAYSASYYPCMEILYECYEDVASGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVNVFVQYGLLVTWVPFIHLLLVFMWH*

Protein Length: 215

Fln nts: GAGACGGTTGTATGTCCAGGGCCAGGAGATTAATGGTGCAGGAATAAACTCTAGTTTTGCTGTGCATCAGGATGTTGATGGGAGAGCAACAGATGTTGCTTTGGGATGGTCAGTTGCTTTGGGTTCACCATTTACATTTGCAACGACCCTGGAGGATGAATACAAGAGTGATATTTTTGGGGAGCGTGGGATCTTGTTGGGAGCTGTACATGGTATAGTTGAAGCATTGTTCAGACGATATACCGAGCGTGGAATGGATGACGAACTTGCTTACAAAAATACTGTGGAAGGAATAACTGGGATCATATCAAAAACTATCTCAACAAAGGGATTGTTAGCTATATACAATTCTCTGAACGAAAAAGGAAGGAGGGATTTTGAGATGGCATACAGCGCTTCATATTACCCCTGCATGGAAATTTTGTACGAGTGCTATGAGGATGTAGCTTCTGGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGAACGTGTTCGTGCAGTACGGTCTGCTGGTGACTTGGGTCCCCTTTATCCATTTACTGCTGGTGTTTATGTGGCATTGATGATGGCACAGATTGAGATCTTGAGGAAGAAGGGTCATTCGTACTCAGAGATTATTAATGAGAGTGTTATTGAAGCTGTGGACTCTTTAAATCCTTTCATGCATGCACGTGGTGTTTCCTTTATGGTTGACAATTGCTCAACAACAGCACGGCTTGGGTCAAGAAAATGGGCCCCTCGATTTGACTATATTTTAACTCAACAGGCTTTTGTAACTGTTGATGCGGGCTCACCCATTAACAGAGATCTCATAAGTAACTTCCTTTCTGACCCTGTGCACAATGCTATAGAGACCTGTGCAAAATTGCGTCCTACTGTTGATATAGCAGTTACAGCAAATGCAGACTATGTCAGGCCAGAACTACGGCAGTAAACTCATGACTATCTACCTGTGTATATGGATCCTCAACTGGACTAACTAAATATTAGAGTGGTTCTAGAATGCTGCATGCCATATTTGGTGTAAAACTGCATGTGATACTTGGTGGAAGAAGATTTACACTCCAACATCCAATGCAGTTTAGGGATTGTTTTTTATGTTTATGGTTCATTACCAATTTGGTCAGTTTATCAATAAGGAATGGTTCTTTTCAATTGGAACTGCAGAATTTCCCCTCCTTAGTTGATGTGCTATATAGCAAGCAGTAGGCTGATTAGGATCTAAACTGGTATTATGGTTCTGCTTCGATATTGAGACAATAAAAGGAAACTTTATATATCTACGAGGTACAGAGACGAAAATAATACACTCATTGAAGAGTTCATTAAATTTTGTGCTCTTGAAAAAGAAGGTTCATTTACT

Fln Alignment:

sp_v1.1_unigene7328___RRLYVQGQEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEDEYKSDIFGERGILLGAVHGIVEALFRRYTERGMDDELAYKNTVEXXXXXXXXXXXXXXLLAIYNSLNEKGRRDFEMAYSASYYPCMEILYECYEDVASGNExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLVNVFVQYGLLVTWVPFIHLLLVFMWH
B8LR30______________RRLYVQGKQINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEDEYRSDIFGERGILLGAVHGIVEALFRRYTEGGMDEELAYKNTVEGITGIISKTISTKGMLSIYNSLNEEEKGDFEMAYSASYYPCMEILYECYEDVASGNExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLVNGFVQCGLLVTWVLFIHLLPVFMWH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1348	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain