SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7326

Length: 1005 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7326

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	glutamate decarboxylase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate decarboxylase.	EC:4.1.1.15	-	0.0	92%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	92%
Blast2go	beta-Alanine metabolism	00410	92%
Blast2go	Butanoate metabolism	00650	92%
Blast2go	Metabolic pathways	01100	92%
Blast2go	Biosynthesis of secondary metabolites	01110	92%

Source	GOs	Term	Type	Identity
Blast2go	glutamate decarboxylase activity	GO:0004351	Molecular Function	92%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%
Blast2go	cytosol	GO:0005829	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	92%
Blast2go	Glutamate decarboxylase	IPR010107	-	92%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	92%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	92%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTD1

Fln msg: Distance to subject end: 237 aas, your sequence is shorter than subject: 273 - 509

Fln protein: MVLSRAAPDSDAHVQSTFGSRYVQECLPRFRMPDRSIPKDAAYQIISDELMLDGNPRLNLASFVSTWMEPECDKLIMQAINKNYVDMDEYPITTEFQNRCVNIIANLFNAPLGDGEEAVGVATVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLIQKNKETGWDTGIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV

Protein Length: 274

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGCTAGTCTTCTTCGCAGTATAAAGTGCCCCTGATTCCACACCCAACTTCCATCGCTAGTCTTCTTCGCTGTTCTGCAACTCACCACATATTGTGAAACACTATTGTGGATTAAGATCTCTTCGAAGAACAACCTCTGTACTTCCGTATTTCAGAAAAA_-_ATGGTTCTAAGTCGTGCTGCGCCTGATTCGGATGCCCATGTACAGTCAACTTTTGGCTCTAGATATGTACAGGAATGCTTGCCTCGGTTTCGAATGCCGGATAGGTCCATTCCCAAAGATGCGGCCTATCAGATTATCAGCGACGAGCTGATGCTGGATGGGAACCCCAGACTTAATCTTGCATCTTTTGTTTCCACATGGATGGAACCAGAATGCGATAAGCTCATAATGCAGGCAATCAACAAGAACTATGTCGACATGGACGAGTATCCGATTACCACAGAGTTTCAGAATCGATGTGTGAACATTATAGCCAATCTTTTTAATGCCCCACTTGGCGATGGAGAAGAAGCCGTGGGCGTGGCTACGGTGGGATCTTCAGAAGCGATCATGTTGGCCGGCCTTGCTTTCAAGCGCAAATGGCAGAACAAGCGCAAGGCAGAGGGAAAGCCGTATGACAAGCCCAACATTGTGACTGGTGCAAATGTGCAGGTGTGTTGGGAAAAATTTGCCCGTTATTTTGAAGTAGAGTTAAAGGAAGTTAAGCTGCGGGAGGGTTACTATGTCATGGACCCTGTCAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTGGCAGCCATCTTGGGTTCCACATATAATGGAGAGTTCGAGGATGTTAAGCTGTTGAATGATCTCCTTATTCAGAAAAACAAGGAAACAGGGTGGGACACAGGCATACATGTGGACGCAGCGAGCGGTGGATTCATTGCACCGTTCCTCTACCCTGATTTGGAATGGGACTTCCGCCTTCCATTGGTGAAGAGCATCAACGTCA

Fln Alignment:

sp_v1.1_unigene7326___MVLSRAAPDSDAHVQSTFGSRYVQECLPRFRMPDRSIPKDAAYQIISDELMLDGNPRLNLASFVSTWMEPECDKLIMQAINKNYVDMDEYPITTEFQNRCVNIIANLFNAPLGDGEEAVGVATVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLIQKNKETGWDTGIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV
C0PTD1______________MVLSRAT-DSDGSIHSTFASRYVQESLPRFQMPERSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLSNEEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLQKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
13			83	16	0.994512
14	16		83		0.994512
17	16		83		0.994512
20	83		16		0.994512
21		83	16		0.994512
22			16	83	0.994512
23		83	16		0.994512
25	83			16	0.994512
27		83		16	0.994512
112	28		71		1.0
156		28	71		1.0
413	88		11		0.923564
528	11		88		0.923564
533	88			11	0.923564
539		88		11	0.923564
555			90	10	0.90298
556		10		90	0.90298
557			90	10	0.90298
558			90	10	0.90298
561		10		90	0.90298
566	90		10		0.90298
568	90	10			0.90298
569	90			10	0.90298
572	10		90		0.90298
573	90	10			0.90298
578			90	10	0.90298
581	10		90		0.90298
584	10	90			0.90298
587		90		10	0.90298
590		10		90	0.90298
593	10			90	0.90298
599	10		90		0.90298
602		90	10		0.90298
785		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain