SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7312

Length: 1350 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7312

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] sp\|Q9SF78.1\|GDL29_ARATH RecName: Full=GDSL esterase/lipase At1g71691; AltName: Full=Extracellular lipase At1g71691; Flags: Precursor gb\|AAF43219.1\|AC012654_3 Strong similarity to the putati	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	59%
Blast2go	zinc finger	-	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TB28

Fln msg: Overlapping hits, possible frame ERROR between 517 and 516,

Fln protein: MGIKCLNSKAAPWLPCLAFVVTYCCVGVISGEAAPEVTAMFIFGDSLIDNGNNNYIASIAKANFLPYGIDFLGGRPTGRFCNGRTTVDFLGQLLGLPLIPAYLDPSTRGSAILNGVNYASAAAGILDETGxxNLIGRISFNQQIANFGKTLEDLTSQLGSAVAVAQHLSKSIFSITFGSNDYINNYLMPAFYPTSRQYTPEAYSDILMWQLSQQLVALYNLGARKFAVAAMGPLGCIPSQIAMSNSNGSCIDSVNQHAILFNSKLKYLLGTLSLNMPGAHCVYGDAYSAVKDMIDDPSSYGFSVTNQGCCGIGMYNGQITCLPGLEPCTNRDQHVFWDAFHPTEAVNIILATRAYSGPPSDSYPINLKQLAQI*

Protein Length: 375

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCAGCTGGGGGTCTTGGCAACTTATTTCATCTAATTTATTTCTGCTACTCTATGCTCGTTTAGAGTAATATTTGACATATTTGAGGCTCTACAGTG_-_ATGGGAATCAAGTGTTTAAATTCCAAGGCAGCTCCATGGCTCCCCTGTTTAGCTTTTGTTGTTACATATTGTTGTGTTGGAGTGATTTCTGGGGAGGCCGCGCCTGAAGTTACAGCCATGTTTATATTCGGCGATTCTCTGATCGATAATGGCAACAACAACTATATAGCAAGCATTGCCAAAGCCAACTTCTTGCCTTATGGAATAGATTTCCTTGGAGGCCGTCCTACTGGAAGGTTTTGCAATGGCAGGACGACTGTTGATTTTCTAGGGCAATTGCTAGGGCTGCCTCTCATTCCTGCATACCTTGACCCATCTACAAGGGGTTCGGCAATCCTAAATGGAGTGAACTACGCTTCAGCAGCCGCAGGCATTTTGGACGAGACTGGCxxxxxxAACCTTATTGGGCGCATATCGTTCAATCAACAGATTGCAAATTTCGGGAAGACTTTAGAGGATTTGACATCGCAGTTGGGAAGCGCAGTGGCGGTGGCTCAGCATCTATCAAAATCTATTTTCTCAATTACTTTTGGGAGCAACGATTATATCAACAACTATCTTATGCCTGCCTTTTATCCAACCAGTAGACAATACACCCCAGAGGCTTATAGCGATATTCTCATGTGGCAACTTTCACAACAACTGGTGGCTCTATACAACTTGGGAGCTCGCAAATTCGCAGTGGCAGCAATGGGTCCTCTGGGATGCATTCCAAGTCAAATAGCAATGTCCAATAGCAATGGCAGCTGCATTGACAGTGTAAACCAACACGCCATACTCTTCAATTCCAAGCTCAAATATCTTTTGGGCACGCTGTCACTCAATATGCCTGGTGCACATTGCGTCTATGGAGATGCCTACAGTGCAGTTAAAGACATGATCGACGATCCCAGTTCTTATGGTTTTAGTGTGACAAATCAAGGATGCTGTGGGATAGGCATGTATAATGGACAGATAACGTGCCTTCCGGGACTGGAACCGTGTACCAACAGAGACCAGCATGTATTTTGGGACGCATTCCATCCCACTGAAGCTGTGAACATTATTCTGGCCACAAGAGCTTACTCCGGCCCTCCTTCTGACTCTTACCCCATCAATCTCAAGCAGCTTGCTCAGATATAA___TAAGGTTCACATTAACTTTCTGGACAGTCAAATGTCTCTGCTTCTTAAAATATTTTCATTTTGTTATCAGCAGAGCATAATATACCTGTAGTCAAGTTACGAATTT

Fln Alignment:

sp_v1.1_unigene7312___LPC-LAFVVTYCCVGVISGE----AAPEVTAMFIFGDSLIDNGNNNYIASIAKANFLPYGIDFLGGRPTGRFCNGRTTVDFLGQLLGLPLIPAYLDPSTRGSAILNGVNYASAAAGILDETGxNLIGRISFNQQIANFGKTLEDLTSQLGSAVAVAQHLSKSIFSITFGSNDYINNYLMPAFYPTSRQYTPEAYSDILMWQLSQQLVALYNLGARKFAVAAMGPLGCIPSQIAMSNSNG-SCIDSVNQHAILFNSKLKYLLGTLSLNMPGAHCVYGDAYSAVKDMIDDPSSYGFSVTNQGCCGIGMYNGQITCLPGLEPCTNRDQHVFWDAFHPTEAVNIILATRAYSGPPSDSYPINLKQL
D7TB28______________VPCPLIFKIVFMVVVVVVSSNAVVATPEFPAMFVMGDSIVDDGNNNNLNSLAKSNFMPYGIDFNGG-PSGRFCNGKTIIDFLGELLGLPYLPAFADSSTTGGNVLRGVNYASAAAGILDETGxNLGDRYSLSQQVQNFESTLNQLRSQMDEN-SLSQYLAKSLVVIVLGSNDYINNYLKPSFYTSSYLYTPIDYADLLINHYTRQILTLHSLGFRKFFLADIGPLGCIPNQLATGLAPPRKCVFFVNELVKMFNTRLRSLVDQLNANHPGAIFVHGNTYRALNDILNSPINYGFSVTNRACCGMGMNQAQITCLPFSVPCVDRDQYVFWDAFHPTQAVNKILAHKAYAGSRSECYPINIQQM

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
330		10		90	0.90298
332			90	10	0.90298
333	90	10			0.90298
334	90		10		0.90298
337		10	90		0.90298
338	90	10			0.90298
341			10	90	0.90298
342		88	11		0.923564
345			11	88	0.923564
346			88	11	0.923564
347		11	88		0.923564
349		11	88		0.923564
350			88	11	0.923564
352	11	88			0.923564
401		20	80		0.999996
403		80		20	0.999996
404	80	20			0.999996
405	80		20		0.999996
407			20	80	0.999996
408	20		80		0.999996
410		20		80	0.999996
411	80			20	0.999996
412			80	20	0.999996
418		80		20	0.999996
420	20			80	0.999996
540		14		85	0.993533
541	85		14		0.993533
546			14	85	0.993533
547	14	85			0.993533
548	85	14			0.993533
549	85	14			0.993533
551		85		14	0.993533
552	85		14		0.993533
553	85		14		0.993533
555	85			14	0.993533
559		14		85	0.993533
560	14		85		0.993533
562	85	14			0.993533
743	83	16			0.994512
744			16	83	0.994512
746		83	16		0.994512
747	16			83	0.994512
749	83	16			0.994512
757	80			20	0.995493
758		80	20		0.995493
760		20		80	0.995493
761	20			80	0.995493
763	80			20	0.995493
930			94	1	0.9999
932		94		5	1.0
933			94	5	1.0
936	94		5		1.0
937		95	4		0.999981
939		1		94	0.9999
940	4			94	0.9999
941		4	94		0.9999
1002	97	2			0.972772
1004	97			2	0.972772
1006	97		2		0.972772
1010		2		97	0.972772
1011		97		2	0.972772
1013	97		2		0.972772
1015			97	2	0.972772
1016	97		2		0.972772

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain