SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7292

Length: 1495 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene7292 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphatidic acid phosphatase-related / PAP2-related; K07252 dolichyldiphosphatase [EC:3.6.1.43]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
AutoFact	Dolichyldiphosphatase.	EC:3.6.1.43	-	0.0	61%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	N-Glycan biosynthesis	00510		0.0	61%
AutoFact	Biosynthesis of terpenoids and steroids	01062		0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphatidic acid phosphatase type 2/haloperoxidase	IPR000326	-	0.0	77%
Blast2go	Phosphatidic acid phosphatase/chloroperoxidase, N-terminal	IPR016118	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK99

Fln msg:

Fln protein: MALKAVSLTHVRYETGDKLGHFLAWISLLPIFISLGGFLTHFMFKRELQAIFFALGILISEFINELVKKSVQQARPDTCLALEMCDSHGWPSSHSQYMAFFAVYLSLLACKGVGFSNKWTKIITAAFPWPFAVLTMYSRVYLGYHTVGQVYAGGLLGLLLGSLWFWFVNSVLIHTFPMLESTPLCEYLCIKDSSHIPDVLRFEYQNAIAARKTKMDAKRGKQARTD*

Protein Length: 228

Fln nts: CGTCGtGAcagtcaCAgTATCtTTATCATCTGCAAATTCCATTAGTTGACGTCCACAATTTATACTTTCCACAAGTCTCCTGATCATTTGATGCGAATCCCCACCCATGGCTACTGGCCTTTACTTATGCCAGGAGTCCGTATTCCATTCGCAATTAGTTTGACTCTGCCATTTCCTCGACCAATCCGATGGCTAGTCTGAGGAGTTTATGTGTTTTATAATAGATTTTTCTTCGCTAGCCAATTTTTCTTCTGCAAGATAAATCTGGGCAAGTGCGGTTCATAGTATCGTCTGAACACCCACTTGATATTCCTCAATACCCATTATATAATTTGGCTTTTGGTATTCAGTTTTAACGCTTAACTATTTTTGGATGTGGGTCTGAGACTGAGAAAAGAAGTCCCGATCTCTTGTCAGATCTCCATTATTGGGCATTTTCAAGATCGAGATCTGTGAATTTGATGCACAATT_-_ATGGCCCTAAAAGCCGTAAGTTTGACTCACGTAAGGTATGAGACAGGTGACAAACTAGGCCATTTCCTCGCATGGATTTCCCTTCTTCCTATTTTCATTAGCCTAGGCGGGTTTCTGACACATTTCATGTTCAAAAGAGAGCTTCAAGCCATTTTTTTCGCATTGGGTATTCTCATATCAGAGTTTATAAACGAACTCGTAAAGAAATCTGTCCAACAAGCCCGCCCTGACACTTGCCTAGCATTAGAGATGTGTGATTCACATGGTTGGCCCTCAAGCCACTCACAGTACATGGCCTTTTTTGCTGTATATCTCTCTCTGCTTGCCTGTAAAGGGGTCGGCTTTTCAAACAAGTGGACTAAAATCATCACTGCTGCCTTTCCTTGGCCCTTCGCAGTGCTCACCATGTATTCCAGAGTGTATTTGGGGTACCACACTGTAGGGCAGGTTTATGCAGGAGGGCTTTTAGGGTTACTTTTGGGTTCTCTTTGGTTTTGGTTTGTAAACTCTGTGCTTATTCATACATTCCCAATGCTTGAAAGCACCCCATTATGTGAATACCTTTGCATCAAGGACAGTTCACATATTCCCGATGTGCTGCGTTTTGAGTACCAGAATGCCATAGCAGCTAGGAAGACGAAGATGGATGCAAAACGTGGAAAACAGGCGAGAACAGATTGA___ATCAGGCTCTGAAGTGGCTATACAGGTGCTCTTGATATGCGTAGATCAACATTTTTTTCCTTTTTGATTACTGTTATTGTTTTCTATTGAATGGGAGTTGCTTAGCATTTCTCAAATCAGCAGCAACACTTGTTAGGGAATAAATATACTGGGAGCAATGACTGTATTATGTGCATTATTACTATCACTATTACTACCATTCTTCTTATTATTTGGAAGTATATTTCTGAAGCAAAGCAATTGCCTTCCATTTATACAGAAGCACTTCTAATTTTGTTATTGTCAAAAGACATTTTGAAAATTGGCTATATGAATCACGTTAATTAGTTTTAAAGACTACCAA

Fln Alignment:

sp_v1.1_unigene7292___MALKAVSLTHVRYETGDKLGHFLAWISLLPIFISLGGFLTHFMFKRELQAIFFALGILISEFINELVKKSVQQARPDTCLALEMCDSHGWPSSHSQYMAFFAVYLSLLACKGVGFSNKWTKIITAAFPWPFAVLTMYSRVYLGYHTVGQVYAXXXXXXXXXXLWFWFVNSVLIHTFPMLESTPLCEYLCIKDSSHIPDVLRFEYQNAIAARKTKMDAKRGKQARTD
A9NK99______________MALKAVSLTHVRYEAGDKLGHFLAWISLLPIFISLGGFLTHFVFRRELQAMFFALGLIISEFINELIKKSVQQARPDTCVALEMCDSNGWPSSHSQYMAFFAMYLSLLVCKGLGISNKRSRYITAALPWPFTVLTMYSRVYLGYHTVAQVYAGGLLGLFLGSLWFWFVNSVLIHTFPMIESAPICEYLCIKDSSHIPDALRFEYQNARAARKATMDAKRGKQARTD

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
67	80		20		0.995493
710	40		60		1.0
1209		81		18	0.999994
1215	11			88	0.923564
1216	88		11		0.923564
1217		11		88	0.923564
1218		11	77	11	0.968132
1221		88	11		0.923564
1222		88	11		0.923564
1223			88	11	0.923564
1227	11			88	0.923564
1228		11		88	0.923564
1253	88			11	0.923564
1254	88		11		0.923564
1256			11	88	0.923564
1259	11		88		0.923564
1265		11	88		0.923564
1269	44			11	1.0
1270	88	11			0.923564
1272	88	11			0.923564
1273	88		11		0.923564
1275	12			87	0.992554
1277			12	87	0.992554
1294	83		16		0.999991
1386	60		40		1.0
1478	66			33	0.997452
1485	66	33			0.997452
1486	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain