SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7289

Length: 2769 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7289
CGTCGTGACCTTGGCTGTCACTCATTTTTTTGAACCATCCTTGTTGCACCATAATGGGTGAACTAAAATAAAGTTGTTCATTCACTTAATACCATCACTCTAGCCTATACTCCGGAACAAACGTGACCTGTTGATTGGGAATTTCAGTTGCATTTTTTGGGAATCTTGAAAGATTATCTGGATTTGTTACATAGACGGATCTTCGTGGCACAGCTAGGTTGTTGTTGTCGTTTCCAGAAGAAATTTGATAACGTAACGCCACTATCAACACATCCCCAATAAAACAAAAGACGTCGTGACCTTGGCTGTCACTCAAATCTAAACATTTATCGTCTGTATCCCAATCATTTATATCTAACCATACTTCAGCTGGGTGAACTGATAGATTTGCAGCACCTCGAAGGTGTTCTACCTAGGTCTTAGTCTTATTTCTGTGTACGGAATCTGCAGAGACTTTGGTCTAATCCATTGGAAAGTTTAAGCTTGGAACCATGGGAGCAGACTTTGTAAGAAATGAGTATCAGTTTTTGAAGGGGCTTGGCTTACATTCCCATAACCTGGGATGTTACGGCAATGGAATATGGAAAGGAAGTGGCAATACTGTGACATCAGTAAATCCTTCTAATAACCAGCCAATAGCAACGGTAGTTGAAGCTTCTATTGAAGAGTACGAAGATAGCTTGAGAGCCTGTGCTGAAGCTCGTAAATTATGGATGCAAACTCCTGCTCCAAAGAGAGGTGAAATTGTAAGGCAGATTGGGGATGCTCTGCGATCAAAATTGGATCTGCTTGGTAGACTTGTATCGTTGGAGATGGGCAAAATCCTCGCAGAGGGGATAGGAGAGGTTCAAGAATTTATTGACATGTGTGATTATGCGGTTGGCTTAAGTCGACAGTTGAATGGGTCTATCATACCTTCAGAACGGCCCAATCATATGATGATGGAGGTTTGGAATCCTCTTGGCATAGTTGGAGTAATTACTGCATTCAACTTTCCATGTGCTGTACTTGGGTGGAATGCATGCATCGCTTTGGTTTGTGGCAATTGTGTTGTTTGGAAAGGTGCTCCTACTACACCATTGATCACTATAGCGACAACAAAACTCATAGCCGAGGTGTTAGAGAGAAATGGCTTGCCTGGTGCCATTTTCACCTGCACCTGTGGTGGTGCAGAGATTGGGCAGGCGATAGCTGAAGATGGAAGAATCCCATTGGTCTCTTTCACTGGAAGCACGAAGGTTGGACAAATTGTTCAGAAGGCAGTCAATGCAAGATTTGGGAAGTGTTTGCTTGAACTTAGTGGAAACAATGCCATTATAGTTATGGAAGACGCAGACTTAGCAATGGTTGTGCGATCTGTTTTGTTTGCTGCAGTTGGTACTGCTGGACAACGATGCACCAGTTGCCGAAGGCTGTTACTCCACGAGAAGATATACCAGCACATCGTTGAGCAGTTGACTGATGCATATAAGCAAGTTAAATTGGGAGACCCTGTTGATAAAGATACACTGTTAGGACCACTGCATACTCGTGCCTCAAAGATGAACTTTGAGAAGGGCATTCAAGTTATAAAATCTCAGGGTGGGCGCATTCTGACGGGTGGCTCTGTTATAGAGCATGAAGGGAATTTTGTGCAACCTACAATTGTGGAAATATCTAAAGATGCACCTGTTGTGAAGGAAGAGCTTTTTGGGCCTGTTCTCTATGTCTTGAAGTTTCAGACCTTGGAGGAAGCTATTGAAATAAACAATTCTGTTGCTCAAGGCCTAAGTAGTTCCATCTTCACTCGGAGCCCAGAAGCTATTTTTAAGTGGATTGGACCTTGTGGTAGTGACTGTGGTATTGTAAACATAAATATACCAACTAGTGGGGCAGAGATTGGGGGTGCATTTGGTGGTGAAAAGGCAACCGGTGGTGGTCGTGAAGCAGGAAGTGATTCATGGAAACAGTACATGCGTCGTGCAACTTGTACACTCAATTATGGGAGCGAACTGCCACTAGCACAAGGGATTAATTTTGGATGTTAAGCATTTTGAATCCTGCAGAGATATTGCTCAAATGCACTCTTGATTTTGAAATATGTAGAATACCAGCAAAAGTTGCTCTATGCAGGTGCTTCTTGTTGGAAACCAAAAATATTTAGTAGCACCATCCAGTGGATGACAAAATACAGTGTTGGAAATATTCAAAGTACCATCCATTCTACAAAGATGCGTTATTTACGTAGAGATGATATCAATAAATAAATTCAACAAGCCTTACTTTAATCTTTTTGTCACTGTTCAACAATTACATATCTGGCAGAGCATAGCTTTGCCTTTTTAACATTAGTCCAAAAATGGGCCGAAATATCCCATTTACCATCTGTTCTGCAGAAATGCATGATTTATATGGAGATATTAAAAATAAATGAATCCAATGCGTGTTATTTTTAGTTTTGGTCTATTATCACTGTGAGGCAGAGAATAGGCATGCTCTTTCAACATGGGGAAAGGCCTCACATTCCTCTGAATACTGTTTCTCTTATATAGTGCTTTACATCTGCAATCCTTGAAAATATTCATGATTATAAAAGATAGCAAAATTGCTGGACATACGTGCTGATGTACTGTTTCCTCAGACTGTCTTTTGGGAGGACAAGACCTAATCAGGGATCTTATTTAACAAGTGTATAAAGTCCATACAAGTAGCTTTGTTCATCCATAGATCCTTGCAAGATACAACTATCACGTTAGAAGTGACTCTAATGTCATCCACCATTGTAATAAG

Ace file of the UniGene sp_v1.1_unigene7289

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to aldehyde dehydrogenase family 7 member A1; K14085 aldehyde dehydrogenase family 7 member A1 [EC:1.2.1.31 1.2.1.8 1.2.1.3]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	aldehyde dehydrogenase family 7 member a1	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	88%
Blast2go	response to desiccation	GO:0009269	Biological Process	88%
Blast2go	response to salt stress	GO:0009651	Biological Process	88%

Source	InterPros	Term	Type	Identity
Blast2go	Aldehyde dehydrogenase domain	IPR015590	-	88%
Blast2go	Aldehyde dehydrogenase, conserved site	IPR016160	-	88%
Blast2go	Aldehyde/histidinol dehydrogenase	IPR016161	-	88%
Blast2go	Aldehyde dehydrogenase, N-terminal	IPR016162	-	88%
Blast2go	Aldehyde dehydrogenase, C-terminal	IPR016163	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS13

Fln msg:

Fln protein: MGADFVRNEYQFLKGLGLHSHNLGCYGNGIWKGSGNTVTSVNPSNNQPIATVVEASIEEYEDSLRACAEARKLWMQTPAPKRGEIVRQIGDALRSKLDLLGRLVSLEMGKILAEGIGEVQEFIDMCDYAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIATTKLIAEVLERNGLPGAIFTCTCGGAEIGQAIAEDGRIPLVSFTGSTKVGQIVQKAVNARFGKCLLELSGNNAIIVMEDADLAMVVRSVLFAAVGTAGQRCTSCRRLLLHEKIYQHIVEQLTDAYKQVKLGDPVDKDTLLGPLHTRASKMNFEKGIQVIKSQGGRILTGGSVIEHEGNFVQPTIVEISKDAPVVKEELFGPVLYVLKFQTLEEAIEINNSVAQGLSSSIFTRSPEAIFKWIGPCGSDCGIVNINIPTSGAEIGGAFGGEKATGGGREAGSDSWKQYMRRATCTLNYGSELPLAQGINFGC*

Protein Length: 513

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTGAACCATCCTTGTTGCACCATAATGGGTGAACTAAAATAAAGTTGTTCATTCACTTAATACCATCACTCTAGCCTATACTCCGGAACAAACGTGACCTGTTGATTGGGAATTTCAGTTGCATTTTTTGGGAATCTTGAAAGATTATCTGGATTTGTTACATAGACGGATCTTCGTGGCACAGCTAGGTTGTTGTTGTCGTTTCCAGAAGAAATTTGATAACGTAACGCCACTATCAACACATCCCCAATAAAACAAAAGACGTCGTGACCTTGGCTGTCACTCAAATCTAAACATTTATCGTCTGTATCCCAATCATTTATATCTAACCATACTTCAGCTGGGTGAACTGATAGATTTGCAGCACCTCGAAGGTGTTCTACCTAGGTCTTAGTCTTATTTCTGTGTACGGAATCTGCAGAGACTTTGGTCTAATCCATTGGAAAGTTTAAGCTTGGAACC_-_ATGGGAGCAGACTTTGTAAGAAATGAGTATCAGTTTTTGAAGGGGCTTGGCTTACATTCCCATAACCTGGGATGTTACGGCAATGGAATATGGAAAGGAAGTGGCAATACTGTGACATCAGTAAATCCTTCTAATAACCAGCCAATAGCAACGGTAGTTGAAGCTTCTATTGAAGAGTACGAAGATAGCTTGAGAGCCTGTGCTGAAGCTCGTAAATTATGGATGCAAACTCCTGCTCCAAAGAGAGGTGAAATTGTAAGGCAGATTGGGGATGCTCTGCGATCAAAATTGGATCTGCTTGGTAGACTTGTATCGTTGGAGATGGGCAAAATCCTCGCAGAGGGGATAGGAGAGGTTCAAGAATTTATTGACATGTGTGATTATGCGGTTGGCTTAAGTCGACAGTTGAATGGGTCTATCATACCTTCAGAACGGCCCAATCATATGATGATGGAGGTTTGGAATCCTCTTGGCATAGTTGGAGTAATTACTGCATTCAACTTTCCATGTGCTGTACTTGGGTGGAATGCATGCATCGCTTTGGTTTGTGGCAATTGTGTTGTTTGGAAAGGTGCTCCTACTACACCATTGATCACTATAGCGACAACAAAACTCATAGCCGAGGTGTTAGAGAGAAATGGCTTGCCTGGTGCCATTTTCACCTGCACCTGTGGTGGTGCAGAGATTGGGCAGGCGATAGCTGAAGATGGAAGAATCCCATTGGTCTCTTTCACTGGAAGCACGAAGGTTGGACAAATTGTTCAGAAGGCAGTCAATGCAAGATTTGGGAAGTGTTTGCTTGAACTTAGTGGAAACAATGCCATTATAGTTATGGAAGACGCAGACTTAGCAATGGTTGTGCGATCTGTTTTGTTTGCTGCAGTTGGTACTGCTGGACAACGATGCACCAGTTGCCGAAGGCTGTTACTCCACGAGAAGATATACCAGCACATCGTTGAGCAGTTGACTGATGCATATAAGCAAGTTAAATTGGGAGACCCTGTTGATAAAGATACACTGTTAGGACCACTGCATACTCGTGCCTCAAAGATGAACTTTGAGAAGGGCATTCAAGTTATAAAATCTCAGGGTGGGCGCATTCTGACGGGTGGCTCTGTTATAGAGCATGAAGGGAATTTTGTGCAACCTACAATTGTGGAAATATCTAAAGATGCACCTGTTGTGAAGGAAGAGCTTTTTGGGCCTGTTCTCTATGTCTTGAAGTTTCAGACCTTGGAGGAAGCTATTGAAATAAACAATTCTGTTGCTCAAGGCCTAAGTAGTTCCATCTTCACTCGGAGCCCAGAAGCTATTTTTAAGTGGATTGGACCTTGTGGTAGTGACTGTGGTATTGTAAACATAAATATACCAACTAGTGGGGCAGAGATTGGGGGTGCATTTGGTGGTGAAAAGGCAACCGGTGGTGGTCGTGAAGCAGGAAGTGATTCATGGAAACAGTACATGCGTCGTGCAACTTGTACACTCAATTATGGGAGCGAACTGCCACTAGCACAAGGGATTAATTTTGGATGTTAA___GCATTTTGAATCCTGCAGAGATATTGCTCAAATGCACTCTTGATTTTGAAATATGTAGAATACCAGCAAAAGTTGCTCTATGCAGGTGCTTCTTGTTGGAAACCAAAAATATTTAGTAGCACCATCCAGTGGATGACAAAATACAGTGTTGGAAATATTCAAAGTACCATCCATTCTACAAAGATGCGTTATTTACGTAGAGATGATATCAATAAATAAATTCAACAAGCCTTACTTTAATCTTTTTGTCACTGTTCAACAATTACATATCTGGCAGAGCATAGCTTTGCCTTTTTAACATTAGTCCAAAAATGGGCCGAAATATCCCATTTACCATCTGTTCTGCAGAAATGCATGATTTATATGGAGATATTAAAAATAAATGAATCCAATGCGTGTTATTTTTAGTTTTGGTCTATTATCACTGTGAGGCAGAGAATAGGCATGCTCTTTCAACATGGGGAAAGGCCTCACATTCCTCTGAATACTGTTTCTCTTATATAGTGCTTTACATCTGCAATCCTTGAAAATATTCATGATTATAAAAGATAGCAAAATTGCTGGACATACGTGCTGATGTACTGTTTCCTCAGACTGTCTTTTGGGAGGACAAGACCTAATCAGGGATCTTATTTAACAAGTGTATAAAGTCCATACAAGTAGCTTTGTTCATCCATAGATCCTTGCAAGATACAACTATCACGTTAGAAGTGACTCTAATGTCATCCACCATTGTAATAAG

Fln Alignment:

sp_v1.1_unigene7289___MGADFVRNEYQFLKGLGLHSHNLGCYGNGIWKGSGNTVTSVNPSNNQPIATVVEASIEEYEDSLRACAEARKLWMQTPAPKRGEIVRQIGDALRSKLDLLGRLVSLEMGKILAEGIGEVQEFIDMCDYAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXXXXXEVLERNGLPGAIFTCTCGGAEIGQAIAEDGRIPLVSFTGSTKVGQIVQKAVNARFGKCLLELSGNNAIIVMEDADLAMVVRSVLFAAVGTAGQRCTSCRRLLLHEKIYQHIVEQLTDAYKQVKLGDPVDKDTLLGPLHTRASKMNFEKGIQVIKSQGGRILTGGSVIEHEGNFVQPTIVEISKDAPVVKEELFGPVLYVLKFQTLEEAIEINNSVAQGLSSSIFTRSPEAIFKWIGPCGSDCGIVNINIPTSGAEIXXXXXXXXXXXXXXXXXSDSWKQYMRRATCTLNYGSELPLAQGINFGC
B8LS13______________MGADFVRNEYQFLKGLGLHSHNLGCYGNGIWKGSGNTVTSVNPSNNQPIATVVEASIEEYEDSLRACAEARKIWMQTPAPKRGEIVRQIGEALRSKLDLLGRLVSLEMGKILAEGIGEVQEFIDMCDYAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIATTKLIAEVLERNGFPGAIFTSICGGAEIGQAIAEDGRIPLVSFTGSTKVGQIVQNAVNARFGKCLLELSGNNAIIVMEDADLAMVVRSVLFAAVGTAGQRCTSCRRLLLHEKVYQHVIEQLTDAYKQVKLGDPLDKDTLLGPLHTRASKINFEKGIQVIKSQGGRILTGGSVIEHEGNFVQPTIVEISKDAPVVKEELFGPVLYVLKFQTLEEAIEINNSVSQGLSSSIFTRSPEAIFKWIGPCGSDCGIVNINIPTSGAEIGGAFGGEKATGGGREAGSDSWKQYMHRATCTLNYGSELPLAQGINFGC

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
219	20		80		0.995493
221			20	80	0.995493
223			20	80	0.995493
224			20	80	0.995493
293	75	25			0.996473
294	75		25		0.996473
299		75	25		0.996473
303		75		25	0.996473
306	75		25		0.996473
309	75		25		0.996473
316	25	75			0.996473
374		40		60	1.0
379			80	20	0.995493
380	80	20			0.995493
381	80		20		0.995493
383	20			80	0.995493
390			20	80	0.995493
392			20	80	0.995493
393	20		80		0.995493
398	80		20		0.995493
1048	88		11		0.923564
1451		12		87	0.992554
1992			55	44	1.0
1993	55		44		1.0
1994	55		44		1.0
1998		55		44	1.0
2050	4	1	94		0.999888
2051	94	4	1		0.999888
2052		8		91	1.0
2053	91	7	1		1.0
2059		91		8	1.0
2060	91	7	1		1.0
2062	91	2			1.0
2064		7	92		1.0
2170	96	3			0.988939
2171	96		3		0.989722
2174		96	3		0.989722
2175	96			3	0.989722
2177		3		96	0.989722
2178		3	96		0.989722
2183	96	3			0.991825
2184	96			3	0.991825
2185	96		3		0.991825
2188		3		96	0.991825
2409	84			15	0.999986
2432	37			50	1.0
2531			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain