SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7287

Length: 1615 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7287

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox-leucine zipper protein HAT14, putative	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	homeobox-leucine zipper protein	-	-	71%

Source	InterPros	Term	Type	Identity
Blast2go	Homeodomain	IPR001356	-	71%
Blast2go	Leucine zipper, homeobox-associated	IPR003106	-	71%
Blast2go	HD-ZIP protein, N-terminal	IPR006712	-	71%
Blast2go	Homeodomain-like	IPR009057	-	71%
Blast2go	Homeodomain-related	IPR012287	-	71%
Blast2go	Homeobox, conserved site	IPR017970	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKN4

Fln msg:

Fln protein: MKQMGMDMEDCNTGLGLGMSIGLGMNLMREDLQSHRHHVNGPPVQLDLLPLAPVLPSRDLPWGKTSPGTDGERSAGESKATVPRRIDVNKLPASCYYNEDTGTINVSSPNSALSSFHVDSGGAINAESSCYGMSVKREREATEELEAERACSRVSDEEADQEGGTRKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQELRALKLASPLYMQMPAATLTMCPSCERVVPAENSRPPPFTLAKPQFYSYTHSSAAC*

Protein Length: 309

Fln nts: TATTTAAGATACAGGTTGAATTGACGGCATAAACAGAAGTCATAATTACGACGTCGTGACCTTGGCTGTCACTCAGTCCCATGTGGATTCATATAATCAGCCCATACCCTTCGGCATTTGCCACAGTAGATCTGCCGCCCTTTGCCTTTGTTCTTTCGTCCTTGATGTTATAATTAATACTATTATTATTCTTGTCTTTTTGGTAGTGAACCAGTAGGGTAACTCCATAATCCTCTCCTACATATTGCCGCCTCCTTTCCTCTCTTCTTCATCATCAGTCAATTTTCCCTTGGAGATTTTACATTCTT_-_ATGAAACAGATGGGTATGGATATGGAGGACTGCAATACAGGGCTTGGTCTGGGAATGAGTATTGGCCTTGGGATGAATCTAATGAGAGAAGACCTTCAATCTCACAGACATCATGTCAATGGCCCTCCTGTGCAGTTGGATCTGCTGCCTTTAGCTCCAGTACTGCCGTCCCGTGACTTGCCATGGGGGAAGACTTCACCCGGGACTGATGGCGAGAGATCGGCCGGGGAATCGAAAGCTACCGTGCCCAGGCGAATCGATGTGAACAAATTGCCCGCTTCCTGTTACTACAACGAAGACACGGGCACCATTAATGTGTCGTCCCCAAACAGCGCCCTATCGTCGTTTCATGTGGACTCCGGCGGCGCGATCAACGCTGAGAGCAGCTGCTACGGCATGAGCGTCAAGAGAGAGCGCGAAGCCACCGAGGAATTGGAGGCGGAGAGAGCTTGCTCTAGGGTTAGCGATGAAGAAGCTGATCAAGAGGGCGGCACCAGGAAGAAACTCAGATTGTCCAAGGAGCAATCGGCTCTTTTGGAAGAAAGCTTTAAAGAGAACAGCTCCCTCAATCCTAAGCAAAAGCAAGCCTTGGCCAAAAGGTTGAATCTCCGCCCGCGGCAAGTTGAAGTCTGGTTCCAGAATAGAAGAGCAAGGACAAAGCTGAAGCAAACTGAAGTGGACTGCGAATTTCTGAAAAGATGCTGCGAATCGCTAACAGACGAGAACAGGAGATTGCAGAAAGAATTGCAGGAATTAAGAGCTCTGAAATTGGCGTCTCCGCTGTATATGCAGATGCCAGCGGCAACTCTGACCATGTGCCCCTCCTGTGAAAGGGTTGTTCCGGCGGAGAACAGCAGGCCGCCGCCTTTCACTTTGGCGAAACCGCAGTTCTATTCTTATACGCATTCTTCGGCGGCCTGTTAA___TTAATTAATTGTATATCGGTGTTCTGTACTCAACTCAGGGTCCCCCTCAAGGTTTATTTATTGAGGATCTGCCTTGACTGTAAACTACAGTAAATTAATCCGCACTCTGACGTCGCGGGATCGAAGATTACAGAGAGATATATATATATAGAGAAAGAGAGCGCTGTGTGTGTTTTAGTGAAGTATGTGTATATGCTTATGGATGGGAATCATAGTTAGGAGAAAAATTGTTATAGCTCATACGGACGGATCTGGTCGTCTTTTTACAGACCTTTTTCCCTTGTTATTTCTGTGGGTTTGTTCTCATTGTAAAAACCAGTTGACTAAATCGATAATACACAGGGGAGCCATGATGTTATCAATTGCCTCCTTTTTTTACTAGG

Fln Alignment:

sp_v1.1_unigene7287___ILMKQMGMDMEDCNTXXXXXXXXXXXXXXXREDLQSHRHHVNGPPVQLDLLPLAPVLPSRDLPWGKTSPGTDGERSAGESKATVPRRIDVNKLPASCYYNEDTGTINVSSPNSALSSFHVDSGGAINAESSCYGMSVKXXXXXXXXXXXXXXCSRVSDEEADQEGGTRKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQELRALKLASPLYMQMPAATLTMCPSCERVVPAENSRPPPFTLAKPQFYSYTHSSAAC
A9NKN4______________MLMKQMGMDMEDCNTGLGLGMSIGLGIGLLREDLHSHRHHVNGPPVQLDLLPLAPGLPSRDLPWGKTSPGTDGERSAGESKATVPRRIDVNKLPASCYYNEDAGTINVSSPNSALSSFHVDSGGAINAESSCYAMSVKRERDATDELEADRACSRVSDEEADQEGGTRKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQELRALKLASPLYMQMPAATLTMCPSCERVVPAENSRPPPFTLAKPQFYPYTHSSAAC

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
52		80	20		0.995493
54			20	80	0.995493
56	20		80		0.995493
58		20	80		0.995493
60	20	80			0.995493
61		80		20	0.995493
62		20		80	0.995493
64		20	80		0.995493
65			80	20	0.995493
66		80		20	0.995493
71	80			20	0.995493
72		80	20		0.995493
73			20	80	0.995493
75	80			20	0.995493
123	85		14		0.993533
124		85		14	0.993533
125	85	14			0.993533
131		14		85	0.993533
135		85	14		0.993533
137			88	11	0.923564
138		77	11		0.968132
139		77		22	0.999999
141	11		11	77	0.968132
142		11		88	0.923564
143			11	88	0.923564
144	11		77		0.968132
146	11	88			0.923564
149			11	88	0.923564
154	11			88	0.923564
155		11		88	0.923564
158	11		88		0.923564
216	88			11	0.923564
220		44		55	1.0
1588		16		83	0.994512
1591		40		60	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
1229	1242	TTAA TTAA TTAA TT	14
1370	1382	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain