SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7284

Length: 2184 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7284
CGTCGTGACCTTGGCTGTCACTCAATTTTTCATTAATTGGTTGGGTGGACCAGTGAATACGACCTGCCCCCATTTGCTTTTTCCTTTTTGCTTACATGGGTTTTGTTAGATGCCCATGTGTAGGCCTCGGACAGAGTGGGAATTTTTAGATTAGATTCAACATGGGGGAGGTGTAAATTTTGGGAAGAGAATTTTTAGATTAGATTAAAGGTGTAAATTTTGGGAAGCGTTTCCATCTCAGAGCCATTATTTATACATATCGAGATTAGACGCTGTCTGAAACTAATTGCGCCATTTGATTCTTGCCTGTACTATTCAAATCGGGATTTCCATCCAAAACCAAATCTGAAAATTCTCTATTAGAGACCTGAAACTTCTGATTCTGGTTTCGATTTGTGATCAATCCGGCAGTATGACTTCTGGGAAGAACGGGCTCTTGCCACCTTCCTTTGTTTCTAATTTGCAAAATGTCTTGAAGAACAGAAAGATAGAAAAACCCCCAGAAGAAGAAGAACAAAAACACCAAGAAGAAGAAGCTAAGATCGAGGCTCCAGCCGAAGAGAAGACACGCAATGAAGATTTAGAGAGGAATGAGGATTTAAGGCCCATTGTTCTTGTAACCAGTGAGGATGGAATAGAAGCTCCAGGGCTCAAATGCCTTGTCGAAGCTCTTGTCAATGGAGGTCGCTTCAATGTTCATGTCTGCGCTCCCGAATCAGATAAATCTGGAAGCGGGCATTGCTTATCGGTTCGTCAGACGCTGGTTGCAAGCTCTGTTGGCATCAAAGGGGCTACAGCTTATGAGGTTTCTGGTACCCCAGCAGATTGTGTTTCATTAGGTTTATCTGGAGCACTCTTTCCTTGGAAGAAGCCTTCTTTGGTAATTAGTGGAATCAACAAGGGATCAGACTGTGGATATCACATCATTTATTCTGGCGCTGTTGCAGGTGCAAGGGAAGCTCTCATGTCAGGGGTTCCCTCTATTGCAATATCTTTGAATTGGAAAAAAGATGAGAGCAGCGACAGTGATTTCAAGGAAGCAGTGGAAGTCTGTCTGCCTTTAATATATGCTGCAGTACAAGATACTGAAAAAGATCTGTTTCCTAAAGGTTGTCTATTAAAGGTTGATATTCCAACACACCCATCTGTGAATAAGGGATTTAGAATTACTGGGCAAAGCACATTGCGCTTGACTTCAAATTGGCAACCTGTGACTCTACATCGGCATTTGGCAGGGAAGTACATGTCCAAGGAACAAAGCCTTGGTATCCAGCTGGCACAACTGAGTCAAGCTGCTTCTGCTGCAGGTGCAGCTCGTCGTCTTAATTTACGAAGGAAGAATGTAGAGGTGGAGTCAGTTGGAGAAGCAGGCAAACAAGAAACACAGAATGCGGCAGTCAAAAAGTACTTCCGTGTTGAGTTTTCGGAGCATGAACATGGAGAAACGGATGATGATCTTGACTATGGAGCACTTCAACAAGGATTTGTAACCATTACACCTCTAGGACTGACATGTAATGCTGAATTGGATGCACGCACTGCTGTTGCCTCCTGGATTACTACTGCAATTGATCAAGATGCACCTGCATCTCTCTGACAAAGAAATGAAACCTGGTTGTGTATTGCGTGTCATTATTGACCTGAGTTTGGTGTAGATATTCTGCATATATTCGAGTATAGTCTACTTACTACATAATTTAAACACCTAAAATGGAAACATGGAACCAAGTAAAATCTTCAGGATACCCTGCAATATATATAGGGATCCTTGTAAATAGTTTTTCTCTGCTGCAAAAATTCAGCATGTATTGCATAAAAGTGGTTTTGTAGAAATAGATTTCCAGTATACAATCAATTGTCTTTATACAGCTAAATTATAGCAGCATCCGGTTTTTTTAATTTAATATTTTTTGAGAATTTCTGAAAGCTCCGGGAGCGCTCTGGCATGCATTGCCTCTCACTTTTAGATACCATGTGCTTAAATAATTTTAAAGTTGATTGATATTTTGTATGCAATTTTGAGAATTATGATCCATTATTATCATGGTTCTATGAAGTCCAAACTTCAAAATAACACCGCTGAGGTAGTGGTTCAACACTGCTGATGTTGAACGAGTTTATTTTTAACTGCTCTGCTTATTTAAATATAAGGGATATATGTCTGTCCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene7284

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acid phosphatase survival protein SurE, putative; K03787 5'-nucleotidase [EC:3.1.3.5]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	acid phosphatase	-	-	71%

Source	ECs	Term	Type	e value	Identity
AutoFact	5'-nucleotidase.	EC:3.1.3.5	-	0.0	48%

Source	KEGGs	Term	Identity
AutoFact	Purine metabolism	00230	48%
AutoFact	Pyrimidine metabolism	00240	48%
AutoFact	Nicotinate and nicotinamide metabolism	00760	48%
AutoFact	Biosynthesis of alkaloids derived from histidine and purine	01065	48%
AutoFact	Metabolic pathways	01100	48%
AutoFact	Biosynthesis of secondary metabolites	01110	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK94

Fln msg:

Fln protein: MTSGKNGLLPPSFVSNLQNVLKNRKIEKPPEEEEQKHQEEEAKIEAPAEEKTRNEDLERNEDLRPIVLVTSEDGIEAPGLKCLVEALVNGGRFNVHVCAPESDKSGSGHCLSVRQTLVASSVGIKGATAYEVSGTPADCVSLGLSGALFPWKKPSLVISGINKGSDCGYHIIYSGAVAGAREALMSGVPSIAISLNWKKDESSDSDFKEAVEVCLPLIYAAVQDTEKDLFPKGCLLKVDIPTHPSVNKGFRITGQSTLRLTSNWQPVTLHRHLAGKYMSKEQSLGIQLAQLSQAASAAGAARRLNLRRKNVEVESVGEAGKQETQNAAVKKYFRVEFSEHEHGETDDDLDYGALQQGFVTITPLGLTCNAELDARTAVASWITTAIDQDAPASL*

Protein Length: 396

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCATTAATTGGTTGGGTGGACCAGTGAATACGACCTGCCCCCATTTGCTTTTTCCTTTTTGCTTACATGGGTTTTGTTAGATGCCCATGTGTAGGCCTCGGACAGAGTGGGAATTTTTAGATTAGATTCAACATGGGGGAGGTGTAAATTTTGGGAAGAGAATTTTTAGATTAGATTAAAGGTGTAAATTTTGGGAAGCGTTTCCATCTCAGAGCCATTATTTATACATATCGAGATTAGACGCTGTCTGAAACTAATTGCGCCATTTGATTCTTGCCTGTACTATTCAAATCGGGATTTCCATCCAAAACCAAATCTGAAAATTCTCTATTAGAGACCTGAAACTTCTGATTCTGGTTTCGATTTGTGATCAATCCGGCAGT_-_ATGACTTCTGGGAAGAACGGGCTCTTGCCACCTTCCTTTGTTTCTAATTTGCAAAATGTCTTGAAGAACAGAAAGATAGAAAAACCCCCAGAAGAAGAAGAACAAAAACACCAAGAAGAAGAAGCTAAGATCGAGGCTCCAGCCGAAGAGAAGACACGCAATGAAGATTTAGAGAGGAATGAGGATTTAAGGCCCATTGTTCTTGTAACCAGTGAGGATGGAATAGAAGCTCCAGGGCTCAAATGCCTTGTCGAAGCTCTTGTCAATGGAGGTCGCTTCAATGTTCATGTCTGCGCTCCCGAATCAGATAAATCTGGAAGCGGGCATTGCTTATCGGTTCGTCAGACGCTGGTTGCAAGCTCTGTTGGCATCAAAGGGGCTACAGCTTATGAGGTTTCTGGTACCCCAGCAGATTGTGTTTCATTAGGTTTATCTGGAGCACTCTTTCCTTGGAAGAAGCCTTCTTTGGTAATTAGTGGAATCAACAAGGGATCAGACTGTGGATATCACATCATTTATTCTGGCGCTGTTGCAGGTGCAAGGGAAGCTCTCATGTCAGGGGTTCCCTCTATTGCAATATCTTTGAATTGGAAAAAAGATGAGAGCAGCGACAGTGATTTCAAGGAAGCAGTGGAAGTCTGTCTGCCTTTAATATATGCTGCAGTACAAGATACTGAAAAAGATCTGTTTCCTAAAGGTTGTCTATTAAAGGTTGATATTCCAACACACCCATCTGTGAATAAGGGATTTAGAATTACTGGGCAAAGCACATTGCGCTTGACTTCAAATTGGCAACCTGTGACTCTACATCGGCATTTGGCAGGGAAGTACATGTCCAAGGAACAAAGCCTTGGTATCCAGCTGGCACAACTGAGTCAAGCTGCTTCTGCTGCAGGTGCAGCTCGTCGTCTTAATTTACGAAGGAAGAATGTAGAGGTGGAGTCAGTTGGAGAAGCAGGCAAACAAGAAACACAGAATGCGGCAGTCAAAAAGTACTTCCGTGTTGAGTTTTCGGAGCATGAACATGGAGAAACGGATGATGATCTTGACTATGGAGCACTTCAACAAGGATTTGTAACCATTACACCTCTAGGACTGACATGTAATGCTGAATTGGATGCACGCACTGCTGTTGCCTCCTGGATTACTACTGCAATTGATCAAGATGCACCTGCATCTCTCTGA___CAAAGAAATGAAACCTGGTTGTGTATTGCGTGTCATTATTGACCTGAGTTTGGTGTAGATATTCTGCATATATTCGAGTATAGTCTACTTACTACATAATTTAAACACCTAAAATGGAAACATGGAACCAAGTAAAATCTTCAGGATACCCTGCAATATATATAGGGATCCTTGTAAATAGTTTTTCTCTGCTGCAAAAATTCAGCATGTATTGCATAAAAGTGGTTTTGTAGAAATAGATTTCCAGTATACAATCAATTGTCTTTATACAGCTAAATTATAGCAGCATCCGGTTTTTTTAATTTAATATTTTTTGAGAATTTCTGAAAGCTCCGGGAGCGCTCTGGCATGCATTGCCTCTCACTTTTAGATACCATGTGCTTAAATAATTTTAAAGTTGATTGATATTTTGTATGCAATTTTGAGAATTATGATCCATTATTATCATGGTTCTATGAAGTCCAAACTTCAAAATAACACCGCTGAGGTAGTGGTTCAACACTGCTGATGTTGAACGAGTTTATTTTTAACTGCTCTGCTTATTTAAATATAAGGGATATATGTCTGTCCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene7284___MTSGKNGLLPPSFVSNLQNVLKNRXXXXXXXXXXXXXXXXXXXXXXXXXXXTRNEDLERNEDLRPIVLVTSEDGIEAPGLKCLVEALVNGGRFNVHVCAPESDKSGSGHCLSVRQTLVASSVGIKGATAYEVSGTPADCVSLGLSGALFPWKKPSLVISGINKGSDCGYHIIYSGAVAGAREALMSGVPSIAISLNWKKDESSDSDFKEAVEVCLPLIYAAVQDTEKDLFPKGCLLKVDIPTHPSVNKGFRITGQSTLRLTSNWQPVTLHRHLAGKYMSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXKNVEVESVGEAGKQETQNAAVKKYFRVEFSEHEHGETDDDLDYGALQQGFVTITPLGLTCNAELDARTAVASWITTAIDQDAPASL
B8LK94______________MTSGKNGLLPPSFVSNLQNVLKNRKLEKPPEEEEQKHQEEEAKIEVPAEQKTCIEDLERNEDLRPIVLVTNEDGIEAPGLKCLVEALVNGGRFNVHVCAPESDKSGSGHCVSVRQTLVASSVGIKGATAYEVSGTPADCVSLGLSGALFPWKKPSLVISGINKGSNCGYHIIYSGAVAGAREALMSGVPSIAISLNWKKAESSDSDFKEAVEVCLPLIYAAVQDTEKDLFPKGCLLKVDIPTRPSANKGFKLTGQSTLRLTSNWQPVTLHRHLAGQYMSKEQSLGIQLAQLSQAASAAGAARRLNLRRKNIEVESVGEAGKQETQSVAVKKYFRVEFSEHEHGEMDDDLDYGALEQGFVTITPLGLTCNAQLDTCTSVATWITTAIDQDAPASL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
692		16		83	0.994512
693	33	66			1.0
697		16	83		0.994512
698		16		83	0.994512
703			83	16	0.994512
704		16		83	0.994512
744	12	87			0.992554
746			12	87	0.992554
747	87		12		0.992554
748			12	87	0.992554
1157	90			10	0.90298
1396			88	11	1.0
1401		91	8		1.0
1403	90	9			1.0
1404	90	9			1.0
1405	90			9	1.0
1406	90			9	1.0
1409	89		10		1.0
1411	6			93	0.999453
1414	10	89			1.0
1946			85	14	0.993533
1948	85		14		0.993533
1952	85	14			0.993533
1956		85	14		0.993533
1959		85	14		0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
502	514	AGA AGA AGA AGA A	13
525	536	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain