SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7265

Length: 1406 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7265

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	KUP3 (K+ uptake transporter 3); K03549 KUP system potassium uptake protein	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	potassium transporter	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K+ potassium transporter	IPR003855	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is longer than subject: 290 - 250

Fln protein: MAIMYVWHYGTSKKYEFNLQNKVSMERILSLGPGLGIARVPGIGFIYTELVTGIPAIFSHFVTNLPAFHQVLVFVCIKSVQVPHVPLDERFLIGRVAPKEYRMFRCIVRYGYKDTQQENYDFENNLILNIAEFIQKESEQICGTHSNGSLDCNERMSVISTPEESLMKMVVSDGQEEDSPRPHSRLPVRTPAIDMGSRKKKKVRFEVPESPAMDVAVKSELKELFEAKEAGVAYIIGHSYVKAKASSFMLKKFAIDIAYSFLRTNCRDPSSLLSIPHISLIEVGMIYHV*

Protein Length: 291

Fln nts: CCGGAAGCTTTTTTGTAATTTTTGGGTCTATTGAATTGCTCTACATATCTGCATGCCTAACAAAAGTTCCAGAAGGGGGCTGGGTCCCTCTGGTACTGTCCTTTATCTTC_-_ATGGCTATTATGTACGTTTGGCATTATGGAACTTCAAAGAAGTATGAATTTAACCTCCAAAACAAGGTTTCAATGGAAAGAATTCTTAGTCTAGGGCCAGGTTTAGGGATAGCACGGGTTCCTGGAATTGGGTTTATTTATACAGAACTAGTAACAGGAATTCCTGCCATCTTTAGCCATTTTGTGACAAATCTTCCAGCCTTCCACCAAGTGCTTGTCTTTGTCTGCATCAAGTCTGTTCAGGTTCCACATGTTCCATTGGATGAACGCTTCCTTATAGGCAGAGTAGCTCCAAAAGAATACAGGATGTTCAGGTGCATAGTGAGGTATGGTTACAAGGATACCCAACAAGAAAACTATGACTTTGAGAACAATTTAATTTTAAATATTGCAGAATTTATACAGAAGGAGAGCGAACAGATCTGTGGTACGCATAGCAATGGTTCTCTTGACTGCAATGAAAGAATGTCAGTTATCAGCACGCCTGAAGAATCTCTGATGAAGATGGTCGTTTCAGATGGCCAAGAGGAAGACTCTCCTCGTCCGCATTCTAGATTGCCTGTGAGGACTCCTGCCATAGACATGGGTTCAAGGAAGAAAAAGAAGGTGAGGTTTGAGGTACCAGAGAGTCCTGCTATGGATGTGGCAGTGAAAAGCGAGCTTAAGGAGCTGTTTGAAGCAAAAGAGGCAGGAGTTGCATATATAATAGGCCATTCTTATGTTAAGGCTAAAGCATCATCCTTCATGCTGAAGAAGTTTGCCATAGACATTGCATACAGTTTCTTAAGAACGAATTGCAGAGATCCCTCTTCCTTGCTCAGTATTCCCCACATTTCCCTAATTGAAGTCGGTATGATCTACCATGTCTGA___TCAGCATCCATGATTTTCAGAATTATCTAATGGAACCAATAGTCCCAAATATCAGTTGGAGTGACCTGCTTTGTATATTCCAGAGATATCCAAAGGTTTGTAGAAACATTTTGCCCACATACTGACGTACATTGGAGAGTGTTGGCCAACTGCAGGGCCAGGATCAAGGAAGGCCATGTAAATTTATGCCCTTCCCAATCTTGCTTTGAGGAGGCATGTGTATGTTTATTTCACAGGAGAAAATTTATCCTCCTTCCAAGCTTGGTTTGAGGAGAGGCATGAACATGTTTATTTAACACAGCACACACAGATCCAGGATCTTACCTAATTGTATCTATTTCCCACCCAGGCATTCAAATTCATATATCAATGGTTGAAATTTGCCATGACAGGCTTTTGGGTGTCTTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene7265___IYTELVTGIPAIFSHFVTNLPAFHQVLVFVCIKSVQVPHVPLDERFLIGRVAPKEYRMFRCIVRYGYKDTQQENYDFENNLILNIAEFIQKESEQICGTHSNGSLDCNERMSVISTPEESLMKMVVSDGQEEDSPRPH-SRLPVRT-----PAIDMGS---RKKKKVRFEVPESPAMDVAVKSELKELFEAKEAGVAYIIGHSYVKAKASSFMLKKFAIDIAYSFLRTNCRDXXXXXXXXXXXXXEVGMIYHV
D5A8F8______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSC---SSDSYSADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

SNPs (tot: 3)

Position	A %	G %	T %	Probability
1009	83	16		0.994512
1017	16	83		0.994512
1183		20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain