SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7257

Length: 1738 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7257

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein-related	-	-	3.0e-25	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	protein	-	-	0.0	56%

Source	GOs	Term	Type	Identity
Blast2go	intracellular non-membrane-bounded organelle	GO:0043232	Cellular Component	56%
Blast2go	chloroplast	GO:0009507	Cellular Component	56%
Blast2go	intracellular organelle part	GO:0044446	Cellular Component	56%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L1	IPR002143	-	56%
Blast2go	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	56%
Blast2go	Ribosomal protein L1, superfamily	IPR023674	-	56%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR24

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 375 - 501. Was predicted as Complete, but is very much shorter than de subject

Fln protein: MVNRENESNGSQVSSRVSKEIVELAVELLLTVTNLKPKDQKPQGLGCNEFIYLVVTLKRRPDGTRTIPLSIPVPHxxxRLDGSQKICLIVGNGKEVLQAAETKIKEEDLHISKVFERKQLMAHCRTSEDREKLRLSFDLFMANKAVRIPKFTGLECPTDQRNMLPVDLTHQKWRGELESACSLAYISFISTGCVANVARVSHSSKEIVENVVAVIDSLVSAIPKKWNNIRHMYLKTLGSLDYSLYRSSTMLPIEMEGVEKEAQIDRPKINGEEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDLQCGVVAKSIDTSKKKKKSRKSNKTPVRAV*

Protein Length: 376

Fln nts: CGTCGTGACCTTGGCTATGGGGCACTTACGCATTGCCAATAAGTCGTTTTTGGTGTATGGTTTAGGGTTTTTGAGTGTCTGGGTCTTCTTATACACAATTTATTTTCACGGTTCCTTAACGATTCAACACAGAGAAGAATCTTCTTACGAGGTCTACTGAGGAGCGTTGCTTGGTAAGTTTGAAACTTCATCTTTCCTTCTTTCAGTTTCGTGCTTCATCAGTTGCC_-_ATGGTTAATAGAGAGAACGAAAGCAATGGATCCCAAGTATCCTCTCGAGTAAGCAAGGAAATAGTAGAATTAGCAGTAGAACTGCTCTTGACGGTGACTAATTTAAAGCCTAAGGATCAGAAACCTCAAGGCCTGGGTTGCAATGAGTTTATTTATTTGGTTGTTACGCTGAAAAGGAGACCTGATGGTACACGAACGATTCCCTTGAGCATCCCAGTACCTCATCCxxxxxxTCGTTTGGATGGAAGCCAAAAGATCTGTTTGATTGTCGGCAATGGAAAAGAGGTTTTACAAGCTGCCGAGACCAAGATTAAGGAGGAGGATTTACACATTTCAAAGGTCTTTGAGCGCAAACAGCTAATGGCTCATTGTAGGACATCCGAGGATAGGGAAAAACTGCGTCTGTCTTTTGATTTGTTCATGGCAAATAAAGCAGTGCGGATCCCTAAGTTCACAGGGTTAGAATGCCCCACAGATCAAAGGAATATGCTCCCCGTGGATTTGACCCACCAGAAATGGAGGGGAGAACTGGAGTCAGCTTGCAGTTTGGCTTATATCTCCTTTATCAGTACTGGTTGTGTTGCTAATGTGGCTAGGGTTTCTCATAGCAGCAAGGAAATAGTGGAGAATGTTGTTGCTGTTATCGACAGTCTTGTGTCCGCGATTCCGAAAAAGTGGAATAACATCCGTCATATGTATCTGAAGACCTTGGGCTCTCTGGACTATTCACTTTACAGATCCTCTACAATGCTGCCCATTGAGATGGAAGGTGTGGAAAAAGAAGCACAAATTGACCGACCAAAGATAAATGGGGAAGAAGGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAGATTTGCAATGTGGGGTCGTGGCCAAGAGCATCGATACTTCAAAAAAGAAGAAAAAGTCGAGGAAATCGAATAAAACCCCTGTTAGGGCTGTTTGA___GTCTGCAGTTTCAAGTTACGTTTTTATTTGTCGATGCTTGACTCTACAGGTTGTGTATTTGCTACGGCAATTTGATGTCTGGTAATACTTGACACTGGTTAACTCCTGTGGATATAAGACAGGTTTTGAATTTGATGTTTGGCATCTGAATGTCTGTTTTCGGGGCTCGATCTCTGTATAAGTCGATTCAGATTTTTGAGCAATTCATATTATTTAACGAAAACTATTATGGGAATGTTCCCAACTAATTTTTCTGTATGCTTATAATACTATATAGTTCTCGAATTGATAGTCCTCGAATTGACATTGAAGGACTATGAAAATTATGGTGGCTTTGTAGCATGATTTATAAAGCGTAGATGAAGATTGCGTGTCTGCACCTCCCTTGGAC

Fln Alignment:

sp_v1.1_unigene7257___MVNRENESNGSQVSSRVSKXXXXXXXXXXXXXXXXKPKDQKPQGLGCNEFIYLVVTLKRRPDGTRTIPLSIPVPHPxxRLDGSQKICLIVGNGKEVLQA--AETKIKEEDLHISKVFERKQLMAHCRTSE--DREKLRLSFDLFMANKAVRIPKFTGL---ECPTDQRNMLPVDLTHQKWRGELESACSLAYISFISTGCVANVARVSHSSKEIVENVVAVIDSLVSAIPKKWNNIRHMYLKTLGSLDYSLYRSSTMLPIEMEGVEKEAQIDRPKINGEEGITGGLSSKKRTSDAEKTPNXXXXXXXXXXXXXXXXXXQDVGDGVPMDDSPTTPALEKIIESVDLQESVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGLSSKKRTSDAEKTPNXXXXXXXXXXXXXXXXXXQDVGDGVPMDDSPTTPALEKIIESVDLQESVDLQCGVVAXXXXXXXXXXXXXXXXXTPVR
B8LR24______________MANRENENDESQVSSPVSKEIVELAVELLLKVINSKPKDQKPQRVDRKEFICLVVQLKMRVDSTSTIPESIPVPHPxxRFDGSQAICLIIGDEIEGLNAEVAENKIKDEGLPISKVFQCEKLQADCKTFKFKDRNKLCQSFDLFMAYKSV-VPIIPGLLWSTFPLNERYVVPVDLTHKQWRGELESACSLAIVSSKRSTCVAKVARVSQTSKEIVENVVAVIDRLVSVLPGKWNNISCMFLKTSDSLQCSLYTCLSKMPVGIEDVETGSEIDAPKMNGEAGIAGGLFSKKRIQHSEKTLDTKRKKGLSLEGKTECLNGQDVGDGVPKDDSPPTSGLEKNVESVDLQGGVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGVVSSKKRIQHAEKTPDTKRKKGLSLECKTGYLNGQDVGDGVPKDDSPQTSGLEKNVESVDLQG------GVVANSVDASTKKTKSRSSKKTPVR

SNPs (tot: 3)

Position	C %	G %	T %	Probability
1541		63	36	1.0
1550	10	90		0.90298
1597	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain