SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7234

Length: 3704 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene7234
CGTCGTGACCTTGGCTGTCACTCAATTTTAGCAGGGAAGAGAAAGAAGCGCAGACGCTAACAAATGCAAGCGCGCAGTCTTCGTGTAGTTCGTTGTGGTTCATTTTTCGGATTTTCAGTTCGATGTTTTTGTTTCTGAAGATGCGCTCCTGGAGGTCCCCGTTTCGACTCCTGCGTCCGATCTTGTTTCTCTGCTTTTGTTGCTTTGTCTGTGCCCAGACTCCGACCGACCCGAACGATGCAAAGGTGATGCAGGAGCTGGCAAATAACTTGAATGCAGCAGGCACGCTAGGGTGGGCGCCGGGAATCGATCCCTGCACCTGGAAGTTCGTTAGTTGTTCTGCCGGACGAGTCGTGTCGATTCAGCTGCAGCAGATGAAAATGAAAGGCAGCCTCCCAGCGGATTTCAACAAGCTGAGCGTTTTGCAGAATCTGGGTTTCCAGGGGAACCAGCTAAGCGGGCCGTTGCCGAGCTTTTCAGGGATGAGCGAGTTACAGTATGCTTACCTAAATATCAATAACTTTACTTCGATTCCGCCTGATTTCTTCACAGGACTTACGAGCCTTCAGGTTGTAGCGCTGGATTATAATCCCCTGGCCCCGTGGTCCATTCCCGACAACGTTAAGGATATTGCGACTTTAGTAAACTTCACGGCCAGCAGTGCCGGTGTCGTGGGTTCGATTCCGTCATTCTTCGGCGATGCGCTCGCCGGCATGCAGATGCTGAGTCTGGCTTACAACAATCTCACTGGCACCATACCAGAGACATTCTCAGGGTCTAATATTGAGGTTCTTTGGCTGAATAATCAATTAGGTTCCATGCTTTCTGGATCCATCGAGGTTGTTTCGGGGATGACCGCGCTTACTCAGCTCTGGCTTCAGTCCAATGCTTTCACAGGTCCCATTCCTGACCTTAGCAAGTGCGTGTCGCTGAAAGACCTTGAGCTGCGGGATAATATGCTAACCGGGTCAGTTCCTGTTACTTTAACTTCTCTTCCTGCGTTGCAGAATGTTACTTTAATCAACAATGCATTGCAAGGGCCTTATCCCAATTTTGACAAGCAAATAAATGCAGTCATTGGGGAAAACAGTTTCTGTTTGCCCAACCCGGGTCCCTGTGATAAGAAGGTGGATGTGTTGCTTTCCTTTGCTCAGGATGTTGGGTATCCCTACATTTTGGCCTCTGACTGGAAAGGAAACGATCCCTGTGGTGGTTGGCAGCATGTTAGCTGTGATAATGGAAACATTACTATTTTGAATCTTGTAGGATTGGATTTGAATGGAACTATATCGCCTGCATTGGCTAGTCTTAATTCTTTGAGGGCATTGTTGTTGAGTAATAATAATTTAACAGGGAGTATACCTAGCCAGCTCGCTTCGTTGCCCAATCTCGAGAAATTGGATGTTAGTAATAACCGATTGTCCGGTAAGGTCCCGGTTTTCAAGAAGAGTGTTATTGTGAACGTTGATGGGAATCCGCAGATTGGGAAAAATCCGCCATCGATACCCTCCCCTGGATCACGTCCCCAGACTCCTGATGAGTCACCGACTTCATCAACTCAGAATCCTGTAGCACCTACAGCAGGAAATAGGCCTGGAGCTGTTGCGGGTGCTAAGAAGGACAATAATCGATCATCTTCCTCATTGGGTGTTATAGTGGGTGCTGTTCTAGGTGGGTTTGCTGGATTAAGTGCAATTGCTGGCTTGGGATTGTGTTTCTACAAGAAAGGATTGCCGAGATCAGGCCGTGTGCAGAGCCCCAATACTGTAGTTGTTCATCCTCAGCATTCTGCTTCGGAGTCCGAGTTGCTGAAGATTACTATAGCGGGACAGAATGCGGTGGCTACGACCAGCGATACACAGAGCCGGACGAGCAGTGGGCCGAGTGATGTACATGTGGTGGAGGCTGGTAACATGATCATATCAATCCAGGTTCTTCGTAATATAACGAATGATTTCAGTGAGGAAAACATTCTGGGGCGTGGGGGATTTGGTGTGGTCTACAAAGGTGAGTTACATGATGGGACTAAGATTGCTGTGAAGAGAATGGAGGCAGCGGTTATGAGTAGTAAGGGATTGAATGAATTCCAGGCAGAGATTGGTGTTCTTACAAAGGTTCGTCATAGACACCTTGTTGCATTGCTTGGCTACTGCATTGAGGGAACTGAAAGGCTTTTGGTTTATGAATACATGCCTCAAGGCCCCCTCAGTCACCATTTGTTTGACTGGGAAAAACACAATCTGAAGCCAATGGATTGGACAAAGAGACTCACTATTGCATTGGATGTTGCTAGAGGTGTGGAGTATCTTCACAGTTTGGCTCACCAGAGTTTTATTCATAGAGATCTTAAGCCTTCAAATATACTTCTTGGAGATGATATGCGAGCCAAAGTGTCAGACTTTGGGCTTGTTAGGCTTGCGCCTGAAGGGAAATGCTCCATTGAAACCAGACTGGCGGGCACTTTTGGCTACCTTGCGCCTGAATATGCAGTCACTGGTCGTGTGACAACGAAGGCTGATGTTTTCAGTTATGGAGTGATACTTATGGAGCTCATAACAGGCAGAAGAGCTTTGGATGAAACACAGCCCGAGGAGAGTGTGCATCTGGTAACGTGGTTTAGACGGATGCATATCAGTAAAGAAACCTTTAGGAATGCAATTGACAAGGCTCTGGAAGTCACAGATGAGACATTCAAGAGCATTTGCACTGTTGCAGAACTAGCAGGTCACTGCACTGCACGGGAGCCATACCAGCGACCGGATATGGGTCATGCTGTTAGTGTGCTATCTCCTTTGGTTGAACAATGGAAACCCAGTGATCCAGATGATGAAGATTGTTATGGAATAGATCTGGACATGACTTTACCACAAGCACTGAAAAAATGGCAGGCCTTTGAGGACTCTAATGTAGATGAATCTATAAGAAGCATGGACAATACACAGTCCAGTATTCCCACAAGACCTTTAGGGTTTGCAGATTCCTTCACTTCAGCAGATGGTCGATAATCAGTTTTTTGAAAATTCAGAGTCCAAATTATAAAAATCGGAGACATGATAGAGAAGCCAGGGGATGCTCTGATAAATTTGGCTATCCAAAAGTATTGGATGGAACAAATTTCAATCCTAGAAAATGTTTGTTTCAAGTTTTTGGTGGTAGGAAGTGGTGTTATTACTGACGAGTTCAATGAGTTCTCCAGATTCAAATAGCTCTTCATAATTTAAAGTGGAACACCGGACATGAGATACTGATTGTTGCTCCAGACACCTTGATGTTTAAAGGAATATCAATGAGTTTTCTCATTTTTAAATGCCTGCACTGCAATATCAATTCCTACGGGGAGCTAGGATTGGCCTAGTGCTTGGGTATTGTTTCAACTTTCAACCTTCTGGGACAGGTTTGAAGCAAGATCTGTATTGCAAGGTCTCTTCTGACCGAGAGTTTGAGCAGCAATATCCAGAAAGCTGCAGTAGGATTTTGTTTTTCATATAATGGCTGTTAGGCAGTGTGAAGCTATATATGAACTCAGAAATGTATAATCTAGGGTACTGTGCATGTACAGATACATTTTCGACATCTTGCATTTTGGAAGGAAACTTCCTTTTTCATCTCTGATTTCCCTGTTTTGACTCTTGAGCACGCCAACTTCAACTCTTAGTGGGAAAACCTCTTCCTTTTTTTTATAATAAAAGTTGCATTGATATTTC

Ace file of the UniGene sp_v1.1_unigene7234 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	receptor protein kinase, putative (EC:2.7.10.2)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	receptor protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	transmembrane receptor protein serine/threonine kinase activity	GO:0004675	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	72%
Blast2go	Leucine-rich repeat	IPR001611	-	72%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	72%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	72%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	72%
Blast2go	Protein kinase-like domain	IPR011009	-	72%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	72%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	72%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	72%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is longer than subject: 961 - 431

Fln protein: MFLFLKMRSWRSPFRLLRPILFLCFCCFVCAQTPTDPNDAKVMQELANNLNAAGTLGWAPGIDPCTWKFVSCSAGRVVSIQLQQMKMKGSLPADFNKLSVLQNLGFQGNQLSGPLPSFSGMSELQYAYLNINNFTSIPPDFFTGLTSLQVVALDYNPLAPWSIPDNVKDIATLVNFTASSAGVVGSIPSFFGDALAGMQMLSLAYNNLTGTIPETFSGSNIEVLWLNNQLGSMLSGSIEVVSGMTALTQLWLQSNAFTGPIPDLSKCVSLKDLELRDNMLTGSVPVTLTSLPALQNVTLINNALQGPYPNFDKQINAVIGENSFCLPNPGPCDKKVDVLLSFAQDVGYPYILASDWKGNDPCGGWQHVSCDNGNITILNLVGLDLNGTISPALASLNSLRALLLSNNNLTGSIPSQLASLPNLEKLDVSNNRLSGKVPVFKKSVIVNVDGNPQIGKNPPSIPSPGSRPQTPDESPTSSTQNPVAPTAGNRPGAVAGAKKDNNRSSSSLGVIVGAVLGGFAGLSAIAGLGLCFYKKGLPRSGRVQSPNTVVVHPQHSASESELLKITIAGQNAVATTSDTQSRTSSGPSDVHVVEAGNMIISIQVLRNITNDFSEENILGRGGFGVVYKGELHDGTKIAVKRMEAAVMSSKGLNEFQAEIGVLTKVRHRHLVALLGYCIEGTERLLVYEYMPQGPLSHHLFDWEKHNLKPMDWTKRLTIALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKCSIETRLAGTFGYLAPEYAVTGRVTTKADVFSYGVILMELITGRRALDETQPEESVHLVTWFRRMHISKETFRNAIDKALEVTDETFKSICTVAELAGHCTAREPYQRPDMGHAVSVLSPLVEQWKPSDPDDEDCYGIDLDMTLPQALKKWQAFEDSNVDESIRSMDNTQSSIPTRPLGFADSFTSADGR*

Protein Length: 962

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTAGCAGGGAAGAGAAAGAAGCGCAGACGCTAACAAATGCAAGCGCGCAGTCTTCGTGTAGTTCGTTGTGGTTCATTTTTCGGATTTTCAGTTCG_-_ATGTTTTTGTTTCTGAAGATGCGCTCCTGGAGGTCCCCGTTTCGACTCCTGCGTCCGATCTTGTTTCTCTGCTTTTGTTGCTTTGTCTGTGCCCAGACTCCGACCGACCCGAACGATGCAAAGGTGATGCAGGAGCTGGCAAATAACTTGAATGCAGCAGGCACGCTAGGGTGGGCGCCGGGAATCGATCCCTGCACCTGGAAGTTCGTTAGTTGTTCTGCCGGACGAGTCGTGTCGATTCAGCTGCAGCAGATGAAAATGAAAGGCAGCCTCCCAGCGGATTTCAACAAGCTGAGCGTTTTGCAGAATCTGGGTTTCCAGGGGAACCAGCTAAGCGGGCCGTTGCCGAGCTTTTCAGGGATGAGCGAGTTACAGTATGCTTACCTAAATATCAATAACTTTACTTCGATTCCGCCTGATTTCTTCACAGGACTTACGAGCCTTCAGGTTGTAGCGCTGGATTATAATCCCCTGGCCCCGTGGTCCATTCCCGACAACGTTAAGGATATTGCGACTTTAGTAAACTTCACGGCCAGCAGTGCCGGTGTCGTGGGTTCGATTCCGTCATTCTTCGGCGATGCGCTCGCCGGCATGCAGATGCTGAGTCTGGCTTACAACAATCTCACTGGCACCATACCAGAGACATTCTCAGGGTCTAATATTGAGGTTCTTTGGCTGAATAATCAATTAGGTTCCATGCTTTCTGGATCCATCGAGGTTGTTTCGGGGATGACCGCGCTTACTCAGCTCTGGCTTCAGTCCAATGCTTTCACAGGTCCCATTCCTGACCTTAGCAAGTGCGTGTCGCTGAAAGACCTTGAGCTGCGGGATAATATGCTAACCGGGTCAGTTCCTGTTACTTTAACTTCTCTTCCTGCGTTGCAGAATGTTACTTTAATCAACAATGCATTGCAAGGGCCTTATCCCAATTTTGACAAGCAAATAAATGCAGTCATTGGGGAAAACAGTTTCTGTTTGCCCAACCCGGGTCCCTGTGATAAGAAGGTGGATGTGTTGCTTTCCTTTGCTCAGGATGTTGGGTATCCCTACATTTTGGCCTCTGACTGGAAAGGAAACGATCCCTGTGGTGGTTGGCAGCATGTTAGCTGTGATAATGGAAACATTACTATTTTGAATCTTGTAGGATTGGATTTGAATGGAACTATATCGCCTGCATTGGCTAGTCTTAATTCTTTGAGGGCATTGTTGTTGAGTAATAATAATTTAACAGGGAGTATACCTAGCCAGCTCGCTTCGTTGCCCAATCTCGAGAAATTGGATGTTAGTAATAACCGATTGTCCGGTAAGGTCCCGGTTTTCAAGAAGAGTGTTATTGTGAACGTTGATGGGAATCCGCAGATTGGGAAAAATCCGCCATCGATACCCTCCCCTGGATCACGTCCCCAGACTCCTGATGAGTCACCGACTTCATCAACTCAGAATCCTGTAGCACCTACAGCAGGAAATAGGCCTGGAGCTGTTGCGGGTGCTAAGAAGGACAATAATCGATCATCTTCCTCATTGGGTGTTATAGTGGGTGCTGTTCTAGGTGGGTTTGCTGGATTAAGTGCAATTGCTGGCTTGGGATTGTGTTTCTACAAGAAAGGATTGCCGAGATCAGGCCGTGTGCAGAGCCCCAATACTGTAGTTGTTCATCCTCAGCATTCTGCTTCGGAGTCCGAGTTGCTGAAGATTACTATAGCGGGACAGAATGCGGTGGCTACGACCAGCGATACACAGAGCCGGACGAGCAGTGGGCCGAGTGATGTACATGTGGTGGAGGCTGGTAACATGATCATATCAATCCAGGTTCTTCGTAATATAACGAATGATTTCAGTGAGGAAAACATTCTGGGGCGTGGGGGATTTGGTGTGGTCTACAAAGGTGAGTTACATGATGGGACTAAGATTGCTGTGAAGAGAATGGAGGCAGCGGTTATGAGTAGTAAGGGATTGAATGAATTCCAGGCAGAGATTGGTGTTCTTACAAAGGTTCGTCATAGACACCTTGTTGCATTGCTTGGCTACTGCATTGAGGGAACTGAAAGGCTTTTGGTTTATGAATACATGCCTCAAGGCCCCCTCAGTCACCATTTGTTTGACTGGGAAAAACACAATCTGAAGCCAATGGATTGGACAAAGAGACTCACTATTGCATTGGATGTTGCTAGAGGTGTGGAGTATCTTCACAGTTTGGCTCACCAGAGTTTTATTCATAGAGATCTTAAGCCTTCAAATATACTTCTTGGAGATGATATGCGAGCCAAAGTGTCAGACTTTGGGCTTGTTAGGCTTGCGCCTGAAGGGAAATGCTCCATTGAAACCAGACTGGCGGGCACTTTTGGCTACCTTGCGCCTGAATATGCAGTCACTGGTCGTGTGACAACGAAGGCTGATGTTTTCAGTTATGGAGTGATACTTATGGAGCTCATAACAGGCAGAAGAGCTTTGGATGAAACACAGCCCGAGGAGAGTGTGCATCTGGTAACGTGGTTTAGACGGATGCATATCAGTAAAGAAACCTTTAGGAATGCAATTGACAAGGCTCTGGAAGTCACAGATGAGACATTCAAGAGCATTTGCACTGTTGCAGAACTAGCAGGTCACTGCACTGCACGGGAGCCATACCAGCGACCGGATATGGGTCATGCTGTTAGTGTGCTATCTCCTTTGGTTGAACAATGGAAACCCAGTGATCCAGATGATGAAGATTGTTATGGAATAGATCTGGACATGACTTTACCACAAGCACTGAAAAAATGGCAGGCCTTTGAGGACTCTAATGTAGATGAATCTATAAGAAGCATGGACAATACACAGTCCAGTATTCCCACAAGACCTTTAGGGTTTGCAGATTCCTTCACTTCAGCAGATGGTCGATAA___TCAGTTTTTTGAAAATTCAGAGTCCAAATTATAAAAATCGGAGACATGATAGAGAAGCCAGGGGATGCTCTGATAAATTTGGCTATCCAAAAGTATTGGATGGAACAAATTTCAATCCTAGAAAATGTTTGTTTCAAGTTTTTGGTGGTAGGAAGTGGTGTTATTACTGACGAGTTCAATGAGTTCTCCAGATTCAAATAGCTCTTCATAATTTAAAGTGGAACACCGGACATGAGATACTGATTGTTGCTCCAGACACCTTGATGTTTAAAGGAATATCAATGAGTTTTCTCATTTTTAAATGCCTGCACTGCAATATCAATTCCTACGGGGAGCTAGGATTGGCCTAGTGCTTGGGTATTGTTTCAACTTTCAACCTTCTGGGACAGGTTTGAAGCAAGATCTGTATTGCAAGGTCTCTTCTGACCGAGAGTTTGAGCAGCAATATCCAGAAAGCTGCAGTAGGATTTTGTTTTTCATATAATGGCTGTTAGGCAGTGTGAAGCTATATATGAACTCAGAAATGTATAATCTAGGGTACTGTGCATGTACAGATACATTTTCGACATCTTGCATTTTGGAAGGAAACTTCCTTTTTCATCTCTGATTTCCCTGTTTTGACTCTTGAGCACGCCAACTTCAACTCTTAGTGGGAAAACCTCTTCCTTTTTTTTATAATAAAAGTTGCATTGATATTTC

Fln Alignment:

sp_v1.1_unigene7234___TTSDTQSRTSSGPSDVHVVEAGNMI-ISIQVLRNITNDFSEENILGRGGFGVVYKGELHDGTKIAVKRMEAAVMSSKGLN--------EFQAEIGVLTKVRHRHLVALLGYCIEGTERLLVYEYMPQGPLSHHLFDWEKHNLKPMDWTKRLTIALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEG-KCSIETRLAGTFGYLAPEYAVTGRVTTKADVFSYGVILMELITGRRALDETQPEESVHLVTWFRRMHISKETFRNAIDKALEVTDETFKSICTVAELAGHCTAREPYQRPDMGHAVSVLSPLV
B8LKY1______________STASTESIVSTPRLEEQLRVSSQLLKFTFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLF---RKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLS-GHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLL

SNPs (tot: 71)

Position	A %	C %	G %	T %	Probability
807		88	11		0.923564
822	88	11			0.923564
823		12		75	0.975346
824		12		87	0.992554
825	12			87	0.992554
866		11		88	0.923564
913	87		12		0.992554
1725		90		10	0.90298
1745	90		10		0.90298
2071	77	22			0.999999
2100	25		75		1.0
2104	12	87			0.992554
2166		14		85	0.993533
2218		20		80	0.995493
2223	80			20	0.995493
2229	25		75		0.996473
2291	16		83		0.994512
2358	87		12		0.992554
2359	87	12			0.992554
2478		80	20		0.995493
2642			16	83	0.994512
2740		75	25		0.996473
2741			85	14	0.993533
2743	14			85	0.993533
2744		14		85	0.993533
2749		14		85	0.993533
2751	14			85	0.993533
2752			14	85	0.993533
2753	85		14		0.993533
2756	14	85			0.993533
2759	14	85			0.993533
2760	85	14			0.993533
2901			20	80	0.995493
2904			20	80	0.995493
2905	20			80	0.995493
2913	80		20		0.995493
2915	80	20			0.995493
2918		80	20		0.995493
2919	20			80	0.995493
2921	80		20		0.995493
3560	25		75		1.0
3581		87	12		0.992554
3583			12	87	0.992554
3584		87		12	0.992554
3588		87	12		0.992554
3589		12		87	0.992554
3590		12	87		0.992554
3593	83		16		0.994512
3594	83		16		0.994512
3600	83	16			0.994512
3601	83		16		0.994512
3607	60		40		1.0
3608		60		40	1.0
3609		60	40		1.0
3613	60		40		1.0
3615		40	60		1.0
3618		60	40		1.0
3619			40	60	1.0
3620	60			40	1.0
3626	60	40			1.0
3632	33	66			0.997452
3634		66		33	0.997452
3636	33	66			0.997452
3637		33		66	0.997452
3638	33			66	0.997452
3641	66	33			0.997452
3642	33			66	0.997452
3643	33			66	0.997452
3644			33	66	0.997452
3647		33		66	0.997452
3652	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain