SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7214

Length: 2075 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7214
CGTCGTGACCTTGGCTGTCACTCAGTAATGTTTTGAATTTTGCCACATTCAACTTATTCTTTTCTTGATCTCTGCATTATATCTTGTCTACAGTCCAGTGCTTTGGATTGTAAGATCCTTCTTGCATTCGTTCGCCTGAATCTTTTCGTAGGGCCCGAGTTTGAATTCCATGGCAGCGACTCTGCATATGGCTGGTTCGATTCCGGGGTTTCGCGTGAATCCCAATGCTGATCAGCGAGGCGGAGTAGGAGCCTCGATCACGATTGCGCCCTCTGCCATATTTGGGGGACAGAGTATCACCTTCTCTGAAGAAGGGATTTCTTGCAGATAAATTTGTCGGGGATCATGGCAGCAGGAGATCGGATACAAGAAAAAGAAGTGGAGAGGCGTTCTCCGTGCTCACAGATGTTCCCAAGGAAATCCTGACTTTGCAAGTGCCCAAGTTTGAAAAGCCCATTGCAGACCCAAAATCAGTTTGTTCTGTCATATTGGGTGGGGGAGCCGGGACACGCCTTTTTCCCCTCACAAGGAGAAGAGCCAAGCCAGCAGTACCAATTGGGGGATGTTACAGGTTAATTGATGTGCCAATGAGCAATTGTATTAATAGTGGCATCAACAAGATTTTTATCCTGACTCAATTCAACTCTGCATCACTTAATCGCCACATTGCCCGGACGTACAGTTTTGGGAATGGTGTAAACTTTGGGGATGGCTTCGTCGTGACCTTGGCTGTCACTCAGACGCCAGGTGAAGATGGAATGAAATGGTTTCAGGGCACTGCAGATGCAGTGAGACAATTCACTTGGCTTTTTGAGGATGCCAAGAACAAACATATAGAGCACTTCCTGATTTTGTCTGGTGACCATCTATATCGTATGGATTACATGGACTTTATACAGAGGCACATTGATACTGGGGCTGATATAACAATCTCCTGCGTTCCGATGGATGACAGCCGTGCATCTGATTATGGATTGATGAAAATCAATGACAGAGGTCGAGTGCAATATTTTAGTGAAAAGCCCAAGGGAGCAGACTTGAAAGCAATGGAAGTGGACACAACCAGACCTGGCCTGTCACCCCAAGAGGCTGAAAAGATGCCTTACATTGCTTCAATGGGCATTTATGTCTTCAGGACAGACGTTCTTCTCAAGCTTCTCAAGTGGAGATATCCAACTGCAAATGATTTTGGCTCAGAGATTATTCCTGCGTGTACAAAGGAATACAATGTGCAGGCATATCTTTTTAATGATTACTGGGAGGATATAGGAACAATCAAATCCTTCTTTGATGCAAATTTAGCTCTTGCAACTCAGCCTCCAAAGTTCCACTTTTATGATCCCAAGAAACCTATCTTTACTTCACCTCAATTTCTGCCACCAACAAAAATAGAAAAATGTCAGGTATTGGATTCCATAATTTCACATGGATGTTTTCTCCGAGAATGCAGTGTAGAGCATTCTGTCATAGGCATTCGTTCGCGGTTGGAGTATGGTGCTGAGTTGAAGGAAACAATGATGATGGGGGCTGACTATTATGAAACTGAAGCTGAAATTGCATCCCTATTAGCTGAAGGAAAAGTGCCTATAGGTGTGGGGGAGAATACAAAAATAAGGAATTGTATTATTGACAAAAATGCAAGGATTGGAAAGAATGTCATGATTGTGAACTCAGATAATGTGGAAGAAGCAGAGAGACCATCAGAAGGATTTTATATCCGTTCAGGTATTACTGTAATATTGAAGAACTCCAGAATTAAAGATGGCACTGTGATATAGAGGAGTCCATGTCATTGTGAAGGTGAGCAAGCGAGTATCAAGTTTAGATGGCATATAAAAAATATGTTCCCCAGTAAGGGAGTGCAAAAACGTTTGGCCTATCAAAAGGAAAAAACGAACCTGTAGGAACCATAAATATTGGGGACACAGCTATGTACTGGCAGTGACTGTCAAGAGTTGCACTTGACCAAGATGGGTGAAGGAATATACCGTTACCTGCACCACTGTGTCAAAATTGTACAAGTCTTTCTGCCTTGCAACTGCTAATTATCCATTAATAAAATAATATCGGCAGTG

Ace file of the UniGene sp_v1.1_unigene7214

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-1-phosphate adenylyltransferase (Fragment) n=1 Tax=Citrullus lanatus RepID=O22659_CITLA	-	-	74%
FL-Next	sp=Glucose-1-phosphate adenylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	protein	-	-	87%

Source	InterPros	Term	Type	Identity
Blast2go	Nucleotidyl transferase	IPR005835	-	87%
Blast2go	ADP-glucose pyrophosphorylase, conserved site	IPR005836	-	87%
Blast2go	Trimeric LpxA-like	IPR011004	-	87%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPE1

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: EPRSRLRPLPYLGDRVSPSLKKGFLADKFVGDHGSRRSDTRKRSGEAFSVLTDVPKEILTLQVPKFEKPIADPKSVCSVILGGGAGTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINKIFILTQFNSASLNRHIARTYSFGNGVNFGDGFVVTLAVTQTPGEDGMKWFQGTADAVRQFTWLFEDAKNKHIEHFLILSGDHLYRMDYMDFIQRHIDTGADITISCVPMDDSRASDYGLMKINDRGRVQYFSEKPKGADLKAMEVDTTRPGLSPQEAEKMPYIASMGIYVFRTDVLLKLLKWRYPTANDFGSEIIPACTKEYNVQAYLFNDYWEDIGTIKSFFDANLALATQPPKFHFYDPKKPIFTSPQFLPPTKIEKCQVLDSIISHGCFLRECSVEHSVIGIRSRLEYGAELKETMMMGADYYETEAEIASLLAEGKVPIGVGENTKIRNCIIDKNARIGKNVMIVNSDNVEEAERPSEGFYIRSGITVILKNSRIKDGTVI*

Protein Length: 511

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAATGTTTTGAATTTTGCCACATTCAACTTATTCTTTTCTTGATCTCTGCATTATATCTTGTCTACAGTCCAGTGCTTTGGATTGTAAGATCCTTCTTGCATTCGTTCGCCTGAATCTTTTCGTAGGGCCCGAGTTTGAATTCCATGGCAGCGACTCTGCATATGGCTGGTTCGATTCCGGGGTTTCGCGTGAATCCCAATGCTGATCAGCGAGGCGGAGTAGGAGCCTCGATCACGATTGCGCCCTCTGCCATATTTGGGGGACAGAGTATCACCTTCTCTGAAGAAGGGATTTCTTGCAGATAAATTTGTCGGGGATCATGGCAGCAGGAGATCGGATACAAGAAAAAGAAGTGGAGAGGCGTTCTCCGTGCTCACAGATGTTCCCAAGGAAATCCTGACTTTGCAAGTGCCCAAGTTTGAAAAGCCCATTGCAGACCCAAAATCAGTTTGTTCTGTCATATTGGGTGGGGGAGCCGGGACACGCCTTTTTCCCCTCACAAGGAGAAGAGCCAAGCCAGCAGTACCAATTGGGGGATGTTACAGGTTAATTGATGTGCCAATGAGCAATTGTATTAATAGTGGCATCAACAAGATTTTTATCCTGACTCAATTCAACTCTGCATCACTTAATCGCCACATTGCCCGGACGTACAGTTTTGGGAATGGTGTAAACTTTGGGGATGGCTTCGTCGTGACCTTGGCTGTCACTCAGACGCCAGGTGAAGATGGAATGAAATGGTTTCAGGGCACTGCAGATGCAGTGAGACAATTCACTTGGCTTTTTGAGGATGCCAAGAACAAACATATAGAGCACTTCCTGATTTTGTCTGGTGACCATCTATATCGTATGGATTACATGGACTTTATACAGAGGCACATTGATACTGGGGCTGATATAACAATCTCCTGCGTTCCGATGGATGACAGCCGTGCATCTGATTATGGATTGATGAAAATCAATGACAGAGGTCGAGTGCAATATTTTAGTGAAAAGCCCAAGGGAGCAGACTTGAAAGCAATGGAAGTGGACACAACCAGACCTGGCCTGTCACCCCAAGAGGCTGAAAAGATGCCTTACATTGCTTCAATGGGCATTTATGTCTTCAGGACAGACGTTCTTCTCAAGCTTCTCAAGTGGAGATATCCAACTGCAAATGATTTTGGCTCAGAGATTATTCCTGCGTGTACAAAGGAATACAATGTGCAGGCATATCTTTTTAATGATTACTGGGAGGATATAGGAACAATCAAATCCTTCTTTGATGCAAATTTAGCTCTTGCAACTCAGCCTCCAAAGTTCCACTTTTATGATCCCAAGAAACCTATCTTTACTTCACCTCAATTTCTGCCACCAACAAAAATAGAAAAATGTCAGGTATTGGATTCCATAATTTCACATGGATGTTTTCTCCGAGAATGCAGTGTAGAGCATTCTGTCATAGGCATTCGTTCGCGGTTGGAGTATGGTGCTGAGTTGAAGGAAACAATGATGATGGGGGCTGACTATTATGAAACTGAAGCTGAAATTGCATCCCTATTAGCTGAAGGAAAAGTGCCTATAGGTGTGGGGGAGAATACAAAAATAAGGAATTGTATTATTGACAAAAATGCAAGGATTGGAAAGAATGTCATGATTGTGAACTCAGATAATGTGGAAGAAGCAGAGAGACCATCAGAAGGATTTTATATCCGTTCAGGTATTACTGTAATATTGAAGAACTCCAGAATTAAAGATGGCACTGTGATATAG___AGGAGTCCATGTCATTGTGAAGGTGAGCAAGCGAGTATCAAGTTTAGATGGCATATAAAAAATATGTTCCCCAGTAAGGGAGTGCAAAAACGTTTGGCCTATCAAAAGGAAAAAACGAACCTGTAGGAACCATAAATATTGGGGACACAGCTATGTACTGGCAGTGACTGTCAAGAGTTGCACTTGACCAAGATGGGTGAAGGAATATACCGTTACCTGCACCACTGTGTCAAAATTGTACAAGTCTTTCTGCCTTGCAACTGCTAATTATCCATTAATAAAATAATATCGGCAGTG

Fln Alignment:

sp_v1.1_unigene7214___RSGEAFSVLTDVPKEILTLQVPKFEKPIADPKSVCSVILGGGAGTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINKIFILTQFNSASLNRHIARTYSXXXXXXXXXXXXXTLAVTQTPGEDGMKWFQGTADAVRQFTWLFEDAKNKHIEHFLILSGDHLYRMDYMDFIQRHIDTGADITISCVPMDDSRASDYGLMKINDRGRVQYFSEKPKGADLKAMEVDTTRPGLSPQEAEKMPYIASMGIYVFRTDVLLKLLKWRYPTANDFGSEIIPACTKEYNVQAYLFNDYWEDIGTIKSFFDANLALATQPPKFHFYDPKKPIFTSPQFLPPTKIEKCQVLDSIISHGCFLRECSVEHSVIGIRSRLEYGAELKETMMMGADYYETEAEIASLLAEGKVPIGVGENTKIRNCIIDKNARIGKNVMIVNSDNVEEAERPSEGFYIRSGITVILKNSRIKDGTVI
B8LPE1______________RSVVSMSLLIEVPKESTLKRV---ESSKADPRTVVSVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLARAYSFCNGVNFGDGFVEVLAATQRPGEMGKNWFQGTADAVRQFAWLFEDAKNKEIDDILILSGDHLYRMDYMDFVQKHRDSGADITISCIPIDDSRASDFDLMKIDDNGQVLYFSEKPKGDDLKAMGVDTTVLGLSPEDAKKKPYIASMGVYVFKKEILLNLLRWRFHTANDFGSEIIPASAKEYFVKAYLFDDYWEDIGTIKSFFEANLALIAQPPKFSFYDAKKPIYTSPRNVPPTKVDNCKIVDSIVSHGCFLQNCYIEHSIIGIRSRIESDVSLQDAVMLGADYYETDAEVVSLLAEGKVPVGIGQNTKIRNCIIDKNARIGKNVTIANSENIKEADRTEEGFCIRSGITVILKNSTIKDGLVI

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
85		30		70	1.0
93	70	30			1.0
94			70	30	1.0
97		70	30		1.0
99	60		10	30	1.0
104	30			70	1.0
105		30		70	1.0
107		20	70		0.999998
108	20	10	70		0.999998
126	10		90		0.90298
638		33		66	0.997452
641	80	20			0.995493
642	20			80	0.995493
644		25	25		0.995533
645			20	80	0.995493
722		57		42	1.0
727	42			57	1.0
729	57	42			1.0
732		42		57	1.0
734	42		57		1.0
737	42			57	1.0
739		42		57	1.0
803	90		10		0.90298
804	90	10			0.90298
812		10	90		0.90298
813	10		90		0.90298
852		70		30	1.0
858	30			70	1.0
948		33		66	1.0
954		10	90		0.90298
961	90	10			0.90298
962			90	10	0.90298
963		90		10	0.90298
964		90	10		0.90298
973		10	90		0.90298
987	11		22		0.999999
988	22		77		0.999999
1069	50		50		1.0
1070	50			50	1.0
1073		50		50	1.0
1074	50		50		1.0
1075	50			50	1.0
1090		50		50	1.0
1111		11		88	0.923564
1115	22	66	11		0.999999
1116		22		77	0.999999
1117			11	88	0.923564
1120	88	11			0.923564
1129	88	11			0.923564
1131		11	88		0.923564
1132	11		88		0.923564
1209	90	10			0.90298
1211	90			10	0.90298
1212		10	90		0.90298
1213	90		10		0.90298
1215			10	90	0.90298
1218		10		90	0.90298
1220		90		10	0.90298
1223		90	10		0.90298
1224		10	90		0.90298
1233		10	90		0.90298
1234			90	10	0.90298
1235	90	10			0.90298
1795	11		88		0.923564
1816		50		50	1.0
1867			22	77	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain