SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7192

Length: 2251 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7192
CGTCGTGACCTTGGCTGTCACTCAAACTAAATCCGATTTCAGTGCTAATTGGATTCCGCTCATCATTCGAAGAATCAACGATTATCATGGCTTTTCCCTTCCCATCCAAGCAATCCAGAATCCCAAAATCATGCCATCTTTTTGTTATTCTCCTCCTTCATCATCAAGCAAGAGAAACGGGCGCTGCTGGCCTTGATTTCACATCATGAAGCCGCCCTTGTCCCCGCCTCCGCCCTTTTTTCTGTAACTTCTCCCCACCACAAGATTTCGCCATATTTTTCTAAGCAGAAAACCAAAAAGGGAGTATTGCAAGCTGCCCAAAATGACAGACGTCCTCCCTTCAAAACACTACAATACTGCTCCGAACTACGACTCCTCTTCCTCTTCACCTCCTTCAGACGAAGACGACGATGAGACCGTGTTGAATACCACTTCCCCTCTTATCACACACGACCGGAGAATAAGGGACCAGCGGCTGACTCAGAGAGTGGACCAGAACAGAGCTCAGTTATCTGCTGTTGCTCTCGTCCTAGCAGCCCTGAGAAAGTCCGTTGTGGCTTGCAGAGCAACCAGAGAGGATTCCTGTTCTATGGAGATCAGCTGGCCAACAAATGCCAGGCATGTTGTTCATGTCACGTTTGATCGGTTCCATGGCTTCCTGGGATTACCTGTGGAGTTTGAGCTTGAAGTTCCTAGAAGGGTTCCCAGTGCCAGTGTAAGTGTCTTTGGAGTTTCTGCAGAATCAATGCAGTGTTCATATGATTCAAGGGGCAACAGTGTGCCCACAATTCTTCTGCTTATGCAGAAGAGGTTGTACGCCCAAGGAGGTCTAAAGGCAGAGGGCATATTCCGAATCAACGCAGAGAATAGCCAAGAAGAGCATGTCAGGAACCAACTAAACAAAGGGATTGTGCCACATGATATTGATCTGCATTGTTTGGCAGGTTTGATAAAGGCATGGTTCAGGGAGCTTCCAAGGGGGGTGTTAGACTCACTTACTCCTGAACAAGTAATGCAATGCAATACTGAAGATCAGTGTCTTGAACTGGTCAGGGGTCTACCTCCCACTCAAGCAGCTCTCTTGGACTGGGCCATCAATCTAATGGCAGATGTTGTACAAGAAGAGCAATACAACAAGATGAATTCACGGAACATTGCAATGGTCTTTGCACCCAACATGACCCAGATGGCTGACCCTTTAACAGCTCTGATGTATGCTGTACAAGTAATGAATTTTCTGAAGACTTTAATTATGCAAACTTTAAGAGATCGACAAGTGGCAGCATTAGATCCTAGACCAGACTCTTCTTGTAGAGATCCGTATGATGAAAATGATCATGATAATGCACCACTAGGGTTAAGGGCAAAACACGAACAAGGGCATAACATAGAAGATGATGAAAATGCATGTGGCAGTGTTGAGTCTCCTTTGGATGGCTATTCACATAGCACTGAGGATGAATCAGTTAATGATGTAGAAGAGAGCTTTTTGACTTTTGGTGAGAAAGATATCTCTGATGCAGATGGAATTCCCATTGATGGTAAAGTAGATGACTTCAGTCCAAGGGACAGTCTTAGTAACAAACTAAGGAAGACTAGAGGAATAGAGGGATTTAATGTATCTGATGTTTTTGGCATTAAAAAAGGTGCTGTGATGTATAATTCAGAAAATGACCATGAGGGGGCAAGCACAAGTGAAGGTGATTCTGTTGTTATCAATGAGATTAAAAGTGATTCATTTTGGAGGAACAATGCAGATACTGCCAAGGGAGCTGGGAAACAGTGTACTCAGTGCATGGTTCAAGTGATGCAGCCCACAGAGAAATCAAAAGGCAGGAGTGTCATAAACCAAATCAATCAGCAGATTGAACGAGCAGAAGCTTGGCGATGAATATGTACTTACATTTGTTTCATTTTTTTACAAACCTTATATGTTGTGTGATGAATTTGCTGTTTCTCATGGGAGGAGTCTTGGTATTTGACAGTTTTGAACAATTTGTGCTGAGTGTGTGGTTATTGGGCAGTGGTCTTGAATTCTTCTTTCTCAAGTAGACCAGTGCACAGCCAAGTCTTCCCATTTTTTCCTAATAACTATGTAACCTTTTGTAAATTATTTGATTATTCCACACTTCGGTCCAATCGTAGCACATGATGCATGGCAATGTGTTAGGCTATTCCTTTTGATGCTTGTGTTCGTAGATTTCTTCTAGATTGTTTTGAAATGCATAATGATAATATACTATTCCTTTCC

Ace file of the UniGene sp_v1.1_unigene7192

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	gtpase activating protein, putative	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	56%
Blast2go	gtpase activating	-	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HHF3

Fln msg: your sequence is longer than subject: 523 - 479

Fln protein: MTDVLPSKHYNTAPNYDSSSSSPPSDEDDDETVLNTTSPLITHDRRIRDQRLTQRVDQNRAQLSAVALVLAALRKSVVACRATREDSCSMEISWPTNARHVVHVTFDRFHGFLGLPVEFELEVPRRVPSASVSVFGVSAESMQCSYDSRGNSVPTILLLMQKRLYAQGGLKAEGIFRINAENSQEEHVRNQLNKGIVPHDIDLHCLAGLIKAWFRELPRGVLDSLTPEQVMQCNTEDQCLELVRGLPPTQAALLDWAINLMADVVQEEQYNKMNSRNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLIMQTLRDRQVAALDPRPDSSCRDPYDENDHDNAPLGLRAKHEQGHNIEDDENACGSVESPLDGYSHSTEDESVNDVEESFLTFGEKDISDADGIPIDGKVDDFSPRDSLSNKLRKTRGIEGFNVSDVFGIKKGAVMYNSENDHEGASTSEGDSVVINEIKSDSFWRNNADTAKGAGKQCTQCMVQVMQPTEKSKGRSVINQINQQIERAEAWR*

Protein Length: 524

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTAAATCCGATTTCAGTGCTAATTGGATTCCGCTCATCATTCGAAGAATCAACGATTATCATGGCTTTTCCCTTCCCATCCAAGCAATCCAGAATCCCAAAATCATGCCATCTTTTTGTTATTCTCCTCCTTCATCATCAAGCAAGAGAAACGGGCGCTGCTGGCCTTGATTTCACATCATGAAGCCGCCCTTGTCCCCGCCTCCGCCCTTTTTTCTGTAACTTCTCCCCACCACAAGATTTCGCCATATTTTTCTAAGCAGAAAACCAAAAAGGGAGTATTGCAAGCTGCCCAAA_-_ATGACAGACGTCCTCCCTTCAAAACACTACAATACTGCTCCGAACTACGACTCCTCTTCCTCTTCACCTCCTTCAGACGAAGACGACGATGAGACCGTGTTGAATACCACTTCCCCTCTTATCACACACGACCGGAGAATAAGGGACCAGCGGCTGACTCAGAGAGTGGACCAGAACAGAGCTCAGTTATCTGCTGTTGCTCTCGTCCTAGCAGCCCTGAGAAAGTCCGTTGTGGCTTGCAGAGCAACCAGAGAGGATTCCTGTTCTATGGAGATCAGCTGGCCAACAAATGCCAGGCATGTTGTTCATGTCACGTTTGATCGGTTCCATGGCTTCCTGGGATTACCTGTGGAGTTTGAGCTTGAAGTTCCTAGAAGGGTTCCCAGTGCCAGTGTAAGTGTCTTTGGAGTTTCTGCAGAATCAATGCAGTGTTCATATGATTCAAGGGGCAACAGTGTGCCCACAATTCTTCTGCTTATGCAGAAGAGGTTGTACGCCCAAGGAGGTCTAAAGGCAGAGGGCATATTCCGAATCAACGCAGAGAATAGCCAAGAAGAGCATGTCAGGAACCAACTAAACAAAGGGATTGTGCCACATGATATTGATCTGCATTGTTTGGCAGGTTTGATAAAGGCATGGTTCAGGGAGCTTCCAAGGGGGGTGTTAGACTCACTTACTCCTGAACAAGTAATGCAATGCAATACTGAAGATCAGTGTCTTGAACTGGTCAGGGGTCTACCTCCCACTCAAGCAGCTCTCTTGGACTGGGCCATCAATCTAATGGCAGATGTTGTACAAGAAGAGCAATACAACAAGATGAATTCACGGAACATTGCAATGGTCTTTGCACCCAACATGACCCAGATGGCTGACCCTTTAACAGCTCTGATGTATGCTGTACAAGTAATGAATTTTCTGAAGACTTTAATTATGCAAACTTTAAGAGATCGACAAGTGGCAGCATTAGATCCTAGACCAGACTCTTCTTGTAGAGATCCGTATGATGAAAATGATCATGATAATGCACCACTAGGGTTAAGGGCAAAACACGAACAAGGGCATAACATAGAAGATGATGAAAATGCATGTGGCAGTGTTGAGTCTCCTTTGGATGGCTATTCACATAGCACTGAGGATGAATCAGTTAATGATGTAGAAGAGAGCTTTTTGACTTTTGGTGAGAAAGATATCTCTGATGCAGATGGAATTCCCATTGATGGTAAAGTAGATGACTTCAGTCCAAGGGACAGTCTTAGTAACAAACTAAGGAAGACTAGAGGAATAGAGGGATTTAATGTATCTGATGTTTTTGGCATTAAAAAAGGTGCTGTGATGTATAATTCAGAAAATGACCATGAGGGGGCAAGCACAAGTGAAGGTGATTCTGTTGTTATCAATGAGATTAAAAGTGATTCATTTTGGAGGAACAATGCAGATACTGCCAAGGGAGCTGGGAAACAGTGTACTCAGTGCATGGTTCAAGTGATGCAGCCCACAGAGAAATCAAAAGGCAGGAGTGTCATAAACCAAATCAATCAGCAGATTGAACGAGCAGAAGCTTGGCGATGA___ATATGTACTTACATTTGTTTCATTTTTTTACAAACCTTATATGTTGTGTGATGAATTTGCTGTTTCTCATGGGAGGAGTCTTGGTATTTGACAGTTTTGAACAATTTGTGCTGAGTGTGTGGTTATTGGGCAGTGGTCTTGAATTCTTCTTTCTCAAGTAGACCAGTGCACAGCCAAGTCTTCCCATTTTTTCCTAATAACTATGTAACCTTTTGTAAATTATTTGATTATTCCACACTTCGGTCCAATCGTAGCACATGATGCATGGCAATGTGTTAGGCTATTCCTTTTGATGCTTGTGTTCGTAGATTTCTTCTAGATTGTTTTGAAATGCATAATGATAATATACTATTCCTTTCC

Fln Alignment:

sp_v1.1_unigene7192___CRATREDSCSMEISWPTNARHVVHVTFDRFHGFLGLPVEFELEXXXXXXXXXXXXFGVSAESMQCSYDSRGNSVPTILLLMQKRLYAQGGLKAEGIFRINAENSQEEHVRNQLNKGIVPHDIDLHCLAGLIKAWFRELPRGVLDSLTPEQVMQCNTEDQCLELVRGLPPTQAALLDWAINLMADVVQEEQYNKMNSRNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLIMQTLRDRQVAALDPRPDSSCRDPYDENDHDNAPLGLRAKHEQGHNIEDDENACGSVESPLDGYSHSTEDESVNDVE-ESFLTFGEKDISDADGIPIDGKVDDFSPRDSLSNKLRKTRGIEGFNVSDVFGIKKGAVMYNSENDHEGASTSEGDSVVINEIKSDSFWRNNADTAKGAGKQCTQCMVQVMQ--PTEKSKGRSVINQINQQIERAEAWR
F6HHF3______________CKTDREELCAMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRRLYLQGGLQAEGIFRINAENSQEEYVREQLNRGVVPEGIDLHCLAGLIKAWFRELPTGVLDSLSPEQVMQCQAEEECAELVRLLPPTEAALLDWAINLMADVVQEEHLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLIIKTLREREDSMVEPAPTSSL-EPFDENGHQSPSQPTWLENTAQDN-EETEQAFIMEEPVLESPPYCTQNKHVEDREAHGFLTSLEKSLPNMDG--------SFETLTQVETFVAET---------EVYAV-----------------DSPKTGVQANPLKSKSGQSSNSNIKKGP-KTINRQPSSVCEPGPLEKTKGISNLSRINSRTERIEAWR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
820		83		16	0.994512
862		83		16	0.994512
965	12			87	0.992554
966		12		87	0.992554
967		87	12		0.992554
1181	85		14		0.993533
1376	71		28		1.0
1510	87			12	0.992554
1512	87		12		0.992554
1513			12	87	0.992554
1654	11			88	0.999937
1655		11	88		0.999937
1657		11	88		0.999937
2086		16		66	0.988813
2138		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain