SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7188

Length: 1282 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7188

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PUB26; PUB26 (PLANT U-BOX 26); binding / ubiquitin-protein ligase	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	0.0	69%
Blast2go	Armadillo-type fold	IPR016024	-	0.0	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU60

Fln msg: your sequence is shorter than subject: 208 - 308

Fln protein: RRDLGCHSILVESLTSSDELHELRSTVGNTEGIVQGLVVTLAVTHLPRALKVGIKSLLSLCFIKANREKAVAAGAVSALIEGLVDFEKCDAERALATIELLCRTESGCKDLCDHALAVPVLVKTILKVSGRATEYAAGALLVTCSASEALQKEAIQAGILTQLLLLVQSDCTERAKRKAQMLLKLLRNAWSDESSSPVFCRTDVVPF*

Protein Length: 209

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGGTTGAGTCCCTCACTTCATCTGATGAACTCCATGAACTTAGGTCTACGGTCGGTAATACGGAGGGCATAGTGCAAGGACTCGTCGTGACCTTGGCTGTCACTCATCTCCCCCGGGCATTGAAGGTCGGCATCAAATCGCTCCTATCACTCTGTTTCATCAAGGCCAACAGGGAGAAGGCAGTTGCAGCAGGGGCAGTGAGTGCACTGATTGAAGGCCTGGTGGATTTCGAGAAGTGTGACGCAGAGAGGGCCCTTGCCACCATTGAATTGCTGTGCAGGACCGAATCAGGCTGCAAGGATCTCTGTGACCATGCTCTAGCTGTCCCTGTTTTGGTGAAAACCATTCTCAAGGTTTCTGGCAGAGCCACAGAGTATGCTGCGGGTGCACTTCTTGTCACCTGCAGTGCTTCAGAGGCATTACAGAAGGAGGCCATTCAGGCCGGTATTCTAACACAGCTCTTGCTTCTTGTCCAGAGTGATTGCACTGAAAGAGCCAAGAGAAAAGCTCAGATGCTGCTGAAGCTCCTCAGGAATGCCTGGTCAGATGAATCGTCGTCACCTGTCTTCTGTCGGACCGATGTGGTGCCCTTCTAG___GTCTCCACCAAACAAATTAGACCACCACTCTTGTAATGGTCTTGGATCCATTGCTACAACATCCTGAATGTTGGGTGCTATTTCTTGTTGGCAGTATAGTCAAGTTCACTTCTCCTCTGCAATCCAGAGTTGAAAAAAACAGATCTACAAGCTAATCATATCAGAGATCATTCATGTTCTATGCATAGCTTAGCATTGTTCTGCTGGTCTCCTCAATATGCTACTGTGGATTTCACAATTCATATATAGTCTTGATTACTGTGATATATATAGCCCAAGCCAAAGCCTATAAAATGTGTTTTATGGGTCTTTTTTATTTTGAAAGGCTTTTTCTATGGCTGTACTCATCTCTGTTTCACAGCTCTCAGATCAAGAGCCCATAGGATAGACAAGGAAGAGCTAATAGTCTTCTTTATGCTGATTATGTATTGTATTGAACAAAAGCTTCAATTTCTAAGCATTATGTGCAAATTATTTGGGGCCAGATTTGATGAATCTGTCCCCCTTACTGCTCAAATAAAACATCAGATCCATTTCATTACCAGGCACTATTATGGTATATAAAAACATCAGATCCATTTCATTACCAAGAGCTTTTGGGTGTGTGTTTAGCAGTGAAAGATCAAGATCCTATTTATTGAAGTTTTGCTAAGTTTTT

Fln Alignment:

sp_v1.1_unigene7188___IVQGLVVTLAVTHLPRALKVGIKSLLSLCFIKANREKAVAAGAVSALIEGLVDFEKCDAERALATIELLCRTESGCKDLCDHALAVPVLVKTILKVSGRATEYAAGALLVTCSASEA---LQKEAIQAGILTQLLLLVQSDCTERAKRKAQMLLKLLRNAWSDES
A9NU60______________VVKGLMEGL-VRSLPNYQKLVIKALLALCLTERNRGEAVRAGVVDAILELLPNLKEVCAERALATLDLLCTVSEGRRALREHALAVPLLLDMILKVSDRGTGYAVSALCAICVHEDGGIDARKNAIQSGAFTQLLLLLQSDCTSRAKRKALQLLKVLHKVWGEGS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
448	81		18		0.999994
450		18		81	0.999994
451	81		18		0.999994
452		81		18	0.999994
456	80	20			0.999996
457		20	80		0.999996
458			80	20	0.999996
459	80			20	0.999996
463		80		20	0.999996
464	80		20		0.999996
469		20	80		0.999996
470			80	20	0.999996
471	10	90			0.90298
472	22	77			0.999999
475		22		77	0.999999
607	10	70	20		0.999998
609	90		10		0.90298
610		30		70	1.0
611		10	90		0.90298
779	91	8			0.999807
934		87		12	0.992554
935		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain