SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7177

Length: 337 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene7177
CGTCGTGACCTTGGCTGTCGTGACCTTGTCTGTTATTCAGTCGCTAACAGGACCGGGACTGATGCTTTTGTATCCATTGTATGCCTCTATAAGAGCAATTGAAAGCCCATCAAAAGTAGATGATGAACAGTGGCTTACATACTGGATACTCTACTCTTTTCTAACCCTTGTAGAAATGGCAGCAGCAACACTATTTTCATGGATACCATTTTGGCACCCTGTAAAACTGGTTTGTATAGCGTGGTTAGTTCTACCACAGTTTAGAGGTGCATCATTCATTTATCAGAGGTTTGTGAGGGAACAGTTGATCAAGTACAGGCAGTGGCTTGACAAGGAT

Ace file of the UniGene sp_v1.1_unigene7177

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein HVA22 n=2 Tax=Triticeae RepID=HVA22_HORVU	-	-	5.0e-34	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	hva22e	-	-	1.33492e-34	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	1.33492e-34	81%
Blast2go	response to water deprivation	GO:0009414	Biological Process	1.33492e-34	81%
Blast2go	response to cold	GO:0009409	Biological Process	1.33492e-34	81%
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	1.33492e-34	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	TB2/DP1/HVA22-related protein	IPR004345	-	1.33492e-34	81%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTJ7

Fln msg: Distance to subject end: 55 aas, atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning, your sequence is shorter than subject: 112 - 169

Fln protein: VVTLAVVTLSVIQSLTGPGLMLLYPLYASIRAIESPSKVDDEQWLTYWILYSFLTLVEMAAATLFSWIPFWHPVKLVCIAWLVLPQFRGASFIYQRFVREQLIKYRQWLDKD

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCGTGACCTTGTCTGTTATTCAGTCGCTAACAGGACCGGGACTGATGCTTTTGTATCCATTGTATGCCTCTATAAGAGCAATTGAAAGCCCATCAAAAGTAGATGATGAACAGTGGCTTACATACTGGATACTCTACTCTTTTCTAACCCTTGTAGAAATGGCAGCAGCAACACTATTTTCATGGATACCATTTTGGCACCCTGTAAAACTGGTTTGTATAGCGTGGTTAGTTCTACCACAGTTTAGAGGTGCATCATTCATTTATCAGAGGTTTGTGAGGGAACAGTTGATCAAGTACAGGCAGTGGCTTGACAAGGAT

Fln Alignment:

sp_v1.1_unigene7177___LSVIQSLTGPGLMLLYPLYASIRAIESPSKVDDEQWLTYWILYSFLTLVEMAAATLFSWIPFWHPVKLVCIAWLVLPQFRGASFIYQRFVREQLI
C0PTJ7______________LSNIDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELTFSRMLQWLPFWPYVKLIATCWLVLPVFNGAAYVYENFVRTYLL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
136	14		71	14	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain