SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7175

Length: 1448 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7175

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RXH5_RICCO	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	wrky transcription	-	-	54%

Source	GOs	Term	Type	e value	Identity
Blast2go		GO:0016481	Biological Process	0.0	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA-binding WRKY	IPR003657	-	0.0	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABY6

Fln msg: Distance to subject end: 144 aas,

Fln protein: MMSQGPEDEDDKPATNVSTGLRLVNVQAARNAASDRSTVEMEDCASPINSQETSNPNDMDGEPNSELVVVQKELNRMNEENQRLRFMLNQINSSYNNLQLQLASLMKQQPQNYGHAVREQVHKEEKLNIFRGITGNNMGEAADDQTQTPIQRQFLEIKDLSRLNSGTIAHEDSHTSETRRTLTHAENDQEESKALMAFNHIDNKHARDHDSHGLTSKGHDSPDRTPSPNPSPTHHENVGTPQREGSLDRRSSPGWVPNKMQKIVDQTDATIRKARVSVRARTESPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMSPCCPVRKQVQRLAEDRSILITTYEGSHNHMLPPAATAMASTTAAAASMLLSGSSTSADNIALNASFMAGALMQHPCNTSTASISASAP

Protein Length: 405

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCACGGGGATTGATCTGTCTGTGAAACTTGAGGAGGATGATGATGGAGGGAGGTCTGTGCAGGAGAATGGCAGCCATGGGGAAGCTGAGAAGGATAATGGTTATGATAATCGTACTGCTGAGAAGGATTTCTTCCACCATGAAGTTGGTCGGCTGAGTTTCAGGCTCTTGCCTGTTGATGGTGAGAGCAAGGCCGAGGATGGAACTGCGGAC_-_ATGATGTCACAAGGCCCAGAGGATGAGGATGATAAACCTGCAACCAATGTTTCGACTGGATTGAGGTTGGTTAATGTGCAAGCTGCTCGAAACGCTGCAAGTGATCGGTCCACCGTAGAGATGGAAGATTGTGCATCTCCGATCAATTCTCAGGAGACCTCAAATCCTAATGACATGGATGGTGAACCCAATAGCGAGCTGGTCGTGGTTCAAAAGGAGCTAAATCGTATGAACGAGGAAAATCAGAGATTGAGGTTCATGTTGAACCAGATAAATAGCAGCTACAACAATCTGCAGTTGCAGCTGGCTTCCCTCATGAAGCAGCAGCCTCAAAATTATGGTCATGCTGTTAGAGAGCAGGTCCATAAAGAAGAGAAATTGAACATATTCAGAGGAATAACAGGAAATAATATGGGAGAAGCAGCAGATGATCAAACTCAAACTCCAATTCAGAGGCAATTTCTGGAAATTAAAGACTTGTCAAGGCTTAATTCAGGCACTATTGCTCATGAAGACTCTCATACTTCTGAAACTCGAAGGACCCTGACCCATGCAGAAAATGATCAGGAGGAATCAAAAGCGTTAATGGCGTTCAATCATATTGATAATAAGCATGCTCGGGATCATGACAGCCATGGATTAACTTCGAAAGGCCATGACAGCCCTGATCGAACACCCTCTCCGAATCCTTCTCCCACTCATCATGAAAATGTAGGAACCCCTCAAAGGGAGGGCAGCCTGGATCGCAGATCATCTCCCGGATGGGTGCCCAACAAGATGCAGAAGATTGTGGATCAAACTGATGCAACTATAAGAAAAGCCCGAGTTTCAGTCCGAGCTAGAACCGAGTCACCCATGATAAGTGATGGTTGCCAATGGAGGAAATATGGACAAAAGATGGCCAAGGGCAATCCATGCCCCAGAGCTTACTACAGGTGCACCATGTCACCGTGCTGTCCAGTGCGCAAGCAGGTGCAACGCCTGGCCGAAGACAGATCGATTCTGATAACAACATACGAGGGCAGCCATAACCACATGCTTCCTCCAGCAGCCACAGCCATGGCATCCACTACAGCAGCAGCTGCCTCAATGCTTCTGTCCGGTTCTTCCACATCAGCTGATAACATCGCACTAAATGCAAGCTTCATGGCAGGTGCCCTCATGCAGCATCCTTGCAACACATCAACTGCTAGCATCTCGGCCTCAGCTCCA

Fln Alignment:

sp_v1.1_unigene7175___IRKARVSVRARTESPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMSPCCPVRKQVQRLAEDRSILITTYEGSHNHMLP
D5ABY6______________IREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-NAGCPVRKHVERASHDPKAVITTYEGKHNHDVP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
624		75		25	0.996473
802	66			33	0.997452
804	33			66	0.997452
822	50	50			1.0
828	25		50	25	1.0
832	50			50	1.0
835	25		75		0.996473
837			50	50	1.0
838			50	50	1.0
842	50	50			1.0
1184	20		80		0.999996
1199			80	20	0.999996
1208	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain