SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7146

Length: 1471 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7146

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cellular retinaldehyde-binding/triple function, C-terminal	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	cellular retinaldehyde-binding triple c-terminal	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	CRAL-TRIO domain	IPR001251	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPR9

Fln msg:

Fln protein: METKNDTEDDFSLYVVASDLTVEAHAYGIGKHNNNNDIQEEEENEEWHECDSALSPLFVMGDDDDFSDLDQLQILELQGKDKAGRRILRIVGKFFPAPVIGGERLKKYICQKISTTVSEGPFCIVYIHTAVQREENSPGLSILRWIYEDLPTDYKQRLQSVYFLHPGLLSRLVLATVGRYFLSEGLYWKLKYISRLEFLWNDIKKGQIEIPEFVCEHDALLENRPLMDYGIETDPYHLQEIAGTGHTFSRPVTRFLP*

Protein Length: 259

Fln nts: ATGGGGGAATTCGCCTGTTGGGTTGCTTGCTCCAAACTAATTGTCTCGTACTAATTAAAACATTTTCAATTGAATTCGCCTGTTGGGTTGCTTGCTCCAAACTAATTGTCTCAAATACGGTGTTGGTCGAACAGGAGGAAACTGAACTTTCGCTGGATTGGGAAGAACCAGTAGTG_-_ATGGAAACAAAGAACGATACGGAAGATGATTTTTCCCTGTACGTGGTGGCTTCCGATCTCACAGTGGAAGCTCATGCCTATGGCATTGGGAAACACAACAACAACAACGACATCCAAGAAGAAGAAGAAAACGAAGAATGGCATGAGTGTGATTCTGCCCTTTCCCCCCTTTTTGTGATGGGCGATGATGACGACTTCTCTGACTTGGACCAGCTTCAGATATTAGAACTTCAAGGGAAGGATAAGGCCGGCAGGAGGATCTTGAGAATTGTGGGCAAATTTTTTCCAGCTCCTGTTATTGGTGGAGAAAGGCTGAAGAAATATATATGCCAGAAGATCTCTACTACTGTGTCAGAAGGACCTTTCTGCATTGTATACATACACACTGCTGTCCAGAGAGAAGAAAACTCTCCTGGGCTGTCCATTTTAAGGTGGATATATGAAGATCTTCCTACAGATTACAAGCAGAGGCTTCAGTCAGTTTATTTCTTGCATCCTGGACTTCTATCACGATTGGTTTTAGCCACAGTTGGACGGTACTTCTTAAGTGAAGGATTATACTGGAAATTGAAGTACATTAGTCGTTTGGAATTTTTGTGGAATGATATCAAGAAGGGACAAATTGAGATTCCAGAGTTTGTATGTGAGCATGATGCTCTGCTTGAGAATAGACCATTGATGGACTATGGAATTGAAACGGATCCTTATCATCTTCAAGAAATTGCTGGCACGGGACATACATTTTCCAGACCAGTAACAAGATTTCTTCCTTGA___ACATGTGTAGGAGATCCTCAAATGATGGATTGGATTCTCCAGCAATTTTTTCTGAGACAAGTACTGTATTTTAGCTTCTTTTCTTTGTAATTAATTGATACAAGTATTAATGTGTTCTATCAAATACTTTAGATGTAGAAAAATATTCCTTTTGAGGGATGGTTGAATATTTGAATTGTGAAGTATGTAAATCTGTTATTTCACTGAAAAGTGTTTTATCTACTTAGATAACACTAAAGCCCATGTGTATAATGCTATTCATTATTTTAGGGGAGGCACAGAACACTGCTTCTGAGAAGCGAATCTCCCTTGCAAAATTTTTCACCTTCATCCTCCATGATCGTTCCTCATGATGGAACTTCACAATTCAGACGACTTTGGCACATAACTTCACCCTTAATCATTGAGGAAGCTATTATTGTTGGCCTTAACCTTCGGGCTTGTGCTACAATGCTAGATCTTTACAAATGTTTGTTCATTTCTAAAGTTCTTGGGTGATAGCTGCCATCAATAATTGACAA

Fln Alignment:

sp_v1.1_unigene7146___METKNDTEDDFSLYVVASDLTVEAHAYGIGKHXXXXXXXXXXXXXXXXXCDSALSPLFVMGXXXXXXXXXXXXILELQGKDKAGRRILRIVGKFFPAPVIGGERLKKYICQKISTTVSEGPFCIVYIHTAVQREENSPGLSILRWIYEDLPTDYKQRLQSVYFLHPGLLSRLVLATVGRYFLSEGLYWKLKYISRLEFLWNDIKKGQIEIPEFVCEHDALLENRPLMDYGIETDPYHLQEIAGTGHTFSRPVTRF
B8LPR9______________METKGDAEDDFSLYVVASDLTVDAHAYGIGKHNIQEEEENEEWHD----CDSALSPLLVMDDDDDFSDLDQLQILELQGKDRAGRRILRIVGKFFPAPVIGGERLKKYICQKIFTTVSEGPFCIVYIHTAVQREENSPGLSIIRWIYEDLPTDYKQRLQLVYFLHPGILSRLLLATLGRYFLSEGLYWKLKYINRLEFLWSDIKKGQIEIPEFVCEHDALLENRPLMDYGIETDPYHLHEMPGMGYTFSRSATRW

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1172		14		85	0.993533
1247	20		80		0.995493
1363	16		83		0.994512
1388	25		75		0.996473
1462	75			25	0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
271	284	ACA ACA ACA ACA AC	14
292	305	AAG AAG AAG AAG AA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain