SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7128

Length: 2011 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7128
CGTCGTGACCTTCGTCGTGACCTTGTCTGTAAGGCGAATTCAGTTTCATCATTGAAAGCAGCAGCAGCACATGCCAGTGGCAGTGGGCAGTCTGGCACACCATTTACTGCAATGTGAGCACTCCCATGTTATGCTCTCTAATATTTGACTCTCAATTCCTTTACTCGGCCTTCAAATCCTGTTTGCAGCCTTGAAATCCATAGAGAAGGTCTCTGTAAGATTAGCCCTTTGAATTGAATTCCGAGCGGGCTAAAGAGGCAGAAAAATGAGGGAAATATTGCACATCCAGGGAGGGCAATGCGGGAACCAGATCGGTTCCAAGTTCTGGGAAGTGATCTGTGACGAGCACGGGATCGATCCCACGGGATCTTACCGCGGGGATTCCGATGTGCAGTTGGAAAGAATCAATGTATATTACAATGAGGCAAGCGGAGGGAGATATGTGCCTAGGGCTGTGCTGATGGATCTGGAGCCTGGCACTATTGATAGTGTCAGATCGGGTGCCTATGGCCAGATATTCAGGCCTGATAACTTTGTCTTCGGCCAGAGTGGGGCTGGGAATAACTGGGCCAAGGGTCATTACACTGAGGGCGCTGAGCTCATTGATGGAGTATTGGATGTCGTTAGGAAAGAGGCTGAAAACTGTGACTGCCTTCAAGGATTTCAAGTCTGCCACTCTCTTGGAGGAGGAACTGGATCAGGGATGGGAACATTATTGATCTCAAAGATAAGGGAGGAGTACCCTGACAGAATGATGTTGACATTCTCCGTGTTCCCATCGCCTAAGGTGTCTGACACTGTTGTTGAGCCTTACAATGCAACACTTTCAGTGCATCAGTTGGTTGAGAATGCAGATGAATCCATGGTTCTTGACAATGAAGCTCTGTACGATATTTGCTTCAGAACATTAAAGCTCACAACTCCTACATTTGGAGACCTTAATCATTTGATTTCAGCAACCATGAGCGGGGTAACCTGTTGTTTACGCTTCCCAGGACAGCTGAACTCTGATCTCCGCAAGCTGGCAGTGAATCTCATCCCCTTCCCTCGTCTCCATTTTTTTATGGTTGGTTTTGCGCCACTGACATCAAGGGGGTCGCAAGTTTATCGTGCACTAACTGTGCCTGAGCTCACCCAACAGATGTGGGATTCCAAGAATATGATGTGTGCAGCTGATCCTCGTCACGGCCGTTATCTAACAGCCTCTGCCATGTTCAGAGGAAGGATGAGCACCAAGGAAGTAGATGAACAGATGCTGAACGTGCAGAACAAGAATTCATCCTATTTTGTTGAGTGGATACCAAACAATGTCAAATCAAGTGTCTGTGATATTCCTCCGAAAGGGCTGAAGATGTCATCCACGTTCATTGGCAATTCCACATCAATTCAGGAAATGTTTAGACGCGTGAGTGAGCAATTCACGGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACTGGTGAAGGTATGGATGAGATGGAGTTTACGGAGGCTGAGAGCAACATGAATGATTTGGTTTCAGAATACCAGCAATATCAAGATGCCACTGCAGATGAGGAGGTTGACTATGAAGAAGAAGAAGAAGAAGAAATTCCAATGTAATTAATGTTGTGGAAGGTTCTATTGTTGTTTCTGCTATTTCTCTACAAGTGAAGATGAAATGGATTTCTTTGCAAGTACATCAGTGTGATTTTGCGTAGATAACAAGGTGGTATTGCCCCTAGGTTGCTGCTAAAAGTAGAGGTGTTGCAGTTGAGTGTGTATAAAGGTAGGCAGTTTGGTCAGTTGTGACATATATGTTGAAGGCTATGTAACTGTAACAACTAGTTGATTATCATGACTGATATTTTTGGGGGGTTGCAAGAGTGGTTCTGTTTGCTAAATTGTTAGACAATAAGCAATGTTCTCTCATACATTTTTTTGCCAGATTTAACTATTTGTATCACCTGATTTGTCAAATTTCGTAACTTGAGATTTAATTCTTTAGTTTTCTTATGAGAACTTTAC

Ace file of the UniGene sp_v1.1_unigene7128

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-2/beta-3 chain n=183 Tax=Embryophyta RepID=TBB2_ARATH	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	tubulin beta	-	-	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	97%

Source	InterPros	Term	Type	Identity
Blast2go	Tubulin	IPR000217	-	97%
Blast2go	Beta tubulin	IPR002453	-	97%
Blast2go	Tubulin/FtsZ, GTPase domain	IPR003008	-	97%
Blast2go	Tubulin/FtsZ, C-terminal	IPR008280	-	97%
Blast2go	Beta tubulin, autoregulation binding site	IPR013838	-	97%
Blast2go	Tubulin, conserved site	IPR017975	-	97%
Blast2go	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	97%
Blast2go	Tubulin, C-terminal	IPR023123	-	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT51

Fln msg:

Fln protein: MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYRGDSDVQLERINVYYNEASGGRYVPRAVLMDLEPGTIDSVRSGAYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDGVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQVYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEVDYEEEEEEEIPM*

Protein Length: 448

Fln nts: CGTCGTGACCTTCGTCGTGACCTTGTCTGTAAGGCGAATTCAGTTTCATCATTGAAAGCAGCAGCAGCACATGCCAGTGGCAGTGGGCAGTCTGGCACACCATTTACTGCAATGTGAGCACTCCCATGTTATGCTCTCTAATATTTGACTCTCAATTCCTTTACTCGGCCTTCAAATCCTGTTTGCAGCCTTGAAATCCATAGAGAAGGTCTCTGTAAGATTAGCCCTTTGAATTGAATTCCGAGCGGGCTAAAGAGGCAGAAAA_-_ATGAGGGAAATATTGCACATCCAGGGAGGGCAATGCGGGAACCAGATCGGTTCCAAGTTCTGGGAAGTGATCTGTGACGAGCACGGGATCGATCCCACGGGATCTTACCGCGGGGATTCCGATGTGCAGTTGGAAAGAATCAATGTATATTACAATGAGGCAAGCGGAGGGAGATATGTGCCTAGGGCTGTGCTGATGGATCTGGAGCCTGGCACTATTGATAGTGTCAGATCGGGTGCCTATGGCCAGATATTCAGGCCTGATAACTTTGTCTTCGGCCAGAGTGGGGCTGGGAATAACTGGGCCAAGGGTCATTACACTGAGGGCGCTGAGCTCATTGATGGAGTATTGGATGTCGTTAGGAAAGAGGCTGAAAACTGTGACTGCCTTCAAGGATTTCAAGTCTGCCACTCTCTTGGAGGAGGAACTGGATCAGGGATGGGAACATTATTGATCTCAAAGATAAGGGAGGAGTACCCTGACAGAATGATGTTGACATTCTCCGTGTTCCCATCGCCTAAGGTGTCTGACACTGTTGTTGAGCCTTACAATGCAACACTTTCAGTGCATCAGTTGGTTGAGAATGCAGATGAATCCATGGTTCTTGACAATGAAGCTCTGTACGATATTTGCTTCAGAACATTAAAGCTCACAACTCCTACATTTGGAGACCTTAATCATTTGATTTCAGCAACCATGAGCGGGGTAACCTGTTGTTTACGCTTCCCAGGACAGCTGAACTCTGATCTCCGCAAGCTGGCAGTGAATCTCATCCCCTTCCCTCGTCTCCATTTTTTTATGGTTGGTTTTGCGCCACTGACATCAAGGGGGTCGCAAGTTTATCGTGCACTAACTGTGCCTGAGCTCACCCAACAGATGTGGGATTCCAAGAATATGATGTGTGCAGCTGATCCTCGTCACGGCCGTTATCTAACAGCCTCTGCCATGTTCAGAGGAAGGATGAGCACCAAGGAAGTAGATGAACAGATGCTGAACGTGCAGAACAAGAATTCATCCTATTTTGTTGAGTGGATACCAAACAATGTCAAATCAAGTGTCTGTGATATTCCTCCGAAAGGGCTGAAGATGTCATCCACGTTCATTGGCAATTCCACATCAATTCAGGAAATGTTTAGACGCGTGAGTGAGCAATTCACGGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACTGGTGAAGGTATGGATGAGATGGAGTTTACGGAGGCTGAGAGCAACATGAATGATTTGGTTTCAGAATACCAGCAATATCAAGATGCCACTGCAGATGAGGAGGTTGACTATGAAGAAGAAGAAGAAGAAGAAATTCCAATGTAA___TTAATGTTGTGGAAGGTTCTATTGTTGTTTCTGCTATTTCTCTACAAGTGAAGATGAAATGGATTTCTTTGCAAGTACATCAGTGTGATTTTGCGTAGATAACAAGGTGGTATTGCCCCTAGGTTGCTGCTAAAAGTAGAGGTGTTGCAGTTGAGTGTGTATAAAGGTAGGCAGTTTGGTCAGTTGTGACATATATGTTGAAGGCTATGTAACTGTAACAACTAGTTGATTATCATGACTGATATTTTTGGGGGGTTGCAAGAGTGGTTCTGTTTGCTAAATTGTTAGACAATAAGCAATGTTCTCTCATACATTTTTTTGCCAGATTTAACTATTTGTATCACCTGATTTGTCAAATTTCGTAACTTGAGATTTAATTCTTTAGTTTTCTTATGAGAACTTTAC

Fln Alignment:

sp_v1.1_unigene7128___MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYRGDSDVQLERINVYYNEASGGRYVPRAVLMDLEPGTIDSVRSGAYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDGVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQVYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
C0PT51______________MREILHIQAGQCGNQIGAKFWEVICDEHGIDPTGRYSGDGDLQLERINVYYNEANGGRYVPRAVLVDLEPGTMDSVRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSILDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLISRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
53	75		25		0.996473
55		25	25	25	0.997389
56	33		66		1.0
58	33	16	33	16	1.0
59	33		50	16	1.0
60	33	16	50		1.0
61	16		83		0.994512
62		66	33		1.0
132		28		71	1.0
165			30	70	1.0
166	70		30		1.0
171			70	30	1.0
176		30		70	1.0
177	30	70			1.0
689	88		11		0.992527
773		88		11	0.992527
794	11		88		0.992527
1001	78		21		1.0
1083		75		25	1.0
1086		75	25		1.0
1094	75			25	1.0
1095	75			25	1.0
1098		25	75		1.0
1099			75	25	1.0
1103	25		75		1.0
1105	75			25	1.0
1106	75	25			1.0
1107	25		75		1.0
1124		25		75	1.0
1196		11		88	0.923564
1470		10	90		0.90298
1471	90	10			0.90298
1473		10	90		0.90298
1475	10			90	0.90298
1476	90	10			0.90298
1503		10	90		0.90298
1504	90		10		0.90298
1505		10	90		0.90298
1508		90		10	0.90298
1509	90		10		0.90298
1704	5		95		0.997749
1839		5	94		0.998578

SSRs (tot: 2)

Start position	End position	Sequence	Length
57	69	AGC AGC AGC AGC A	13
1574	1594	GAA GAA GAA GAA GAA GAA GAA	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain