SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7116

Length: 1504 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7116

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lsm1, putative; K12620 U6 snRNA-associated Sm-like protein LSm1	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	90%

Source	InterPros	Term	Type	Identity
Blast2go	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	90%
Blast2go	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	90%
Blast2go	Like-Sm ribonucleoprotein (LSM)-related domain	IPR010920	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ94

Fln msg:

Fln protein: MLFTITSSTDYLRFGCIITIIGVAANSNSNNGIKAGKFREQEEGMSWAGPEDIFLSTSLASYLDKKLLVLLRDGRKLIGILRSFDQFANAVLENALERIIVGDLYCDIPLGLYVIRGENVVLIGELDPEREELPANMIHVSATEIKRAQKAERDATDLKGSMRKRMEFLDLE*

Protein Length: 174

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGCAAGAAGCACGTTTTGACCGTCCGTCTGTTGGGCCACTTTTGATTCGAGTGTTGCTTGAAAAGCTACTTTGTGGGTGATTGACACACACATATATATTTTTCCTCTACTATTCCTGCAACAAAGGGGGATTTGAGTGGGCTATTTTCCAGCACATAGATTGACAAGTGTATTTTACGAGTTATAGGGCTTCTGAGGAAGATCTGGTCGCATGAGCACAGCTTATCAATTAATCGACCGATCGTTAGTTTGGGGAGGACGGAGGAGGGCCGCTGCCA_-_ATGCTATTTACAATAACAAGTTCGACAGATTACCTCAGGTTTGGCTGTATTATCACTATTATTGGTGTTGCAGCAAATAGCAATAGCAATAACGGTATCAAAGCAGGAAAATTTAGAGAGCAGGAGGAGGGGATGTCTTGGGCAGGCCCGGAGGACATCTTCCTCTCCACTTCTCTCGCCAGTTACCTAGATAAAAAGTTATTAGTTTTGCTTCGAGATGGAAGGAAACTCATTGGCATTCTTCGTTCATTTGATCAATTTGCAAATGCTGTATTGGAAAATGCTCTTGAGAGAATAATTGTGGGGGATCTCTACTGTGATATTCCTCTTGGCCTGTATGTGATTAGAGGTGAAAATGTTGTGCTGATAGGAGAGCTGGATCCTGAGAGAGAGGAGCTTCCTGCTAACATGATCCATGTTTCTGCCACAGAGATCAAAAGGGCCCAGAAAGCAGAGAGAGATGCAACAGACTTGAAAGGATCTATGAGAAAACGCATGGAATTTCTTGATTTGGAATAA___TTATCCTCGACTATTACGTCACTATATCTCCTCTCCTAAATCCACCATCGTTCAGTGGAGTTTGGTAAAATTCTTATGGGTTTACTATGCAAGCAATGTATTAGCCATATGTGCTCTGTTAGTTTGGCGAGTTTTGTGCCAAATTGCCCGCAAATATTATCGCGGATGGCACATATGGAAATGTCTGGTTGGGAAGGACTACTTTCTCTTTTCAACTGATTGATGACTTGCAATCCAAACCTGCAGAAATTCTCCTAAGTGTTCAATAGCTTAATGAGCGACTTATAGGTAGTGATTAATTGTCCATTTTTAATCTGTTCTTGAGTTCAATCTTGCGTTTAATAAGAATGTTAATAGCTTAGGAAGTGAACATCATCTTCACGCTGCATGATGTTCTCGGTTTGGCTGTATTATTTTTTTGTAAGATATGGCCATGGCCATGTGGGCACCTTCAGTATGCTTCAGATTTAATAATTCAGTCATTCTTCTGGCTTTTTAAAAGCTGAAGCACTAGTTTATTTGCTTTACATGGGAACCTTGCTTTATTTGGCAATGGGCATTGGTGTGAGCCTCCATACTTTTCACAAAATATGTGATTTTGAATCCATCTATATCGCTGTTCGAGAGATAAATTTGTGGGAAATCTTATTTGCTTGAACGAAAAATACGATTAGACATG

Fln Alignment:

sp_v1.1_unigene7116___MLFTITSSTDYLRFGCIITIIGVAANSNSNNGIKAGKFREQEEGMSWAGPEDIFLSTSLASYLDKKLLVLLRDGRKLIGILRSFDQFANAVLENALERIIVGDLYCDIPLGLYVIRGENVVLIGELDPEREELPANMIHVSATEIKRAQKAERDATDLKGSMRKRMEFLDLE
A9NQ94______________MLFIITSLTDYFRFECIITIIVVAANSNSNNVIKAGEFREQEEGMSWAGPEDIFLSTSLASYLDKKLLVLLRDGRKLIGILRSFDQFANAVLENALERIIVGDLYCDLPLGLYVIRGENVVLIGELDPEREELPANMIHVSATEIKRAQKAERDATDLKGSMRKRMEFLDLE

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
498	90			10	0.90298
499		10	90		0.90298
500	90		10		0.90298
501		10		90	0.90298
503	87		12		0.992554
504	37			12	1.0
505	87		12		0.992554
509			12	87	0.992554
512		12		87	0.992554
515			11	88	0.923564
516		11		88	0.923564
517		11		88	0.923564
626	10		90		0.90298
629	90		10		0.90298
633		10		90	0.90298
634		90	10		0.90298
636	10			90	0.90298
637		90	10		0.90298
639	10			90	0.90298
642	10	90			0.90298
644	10			90	0.90298
646			10	90	0.90298
647	90	10			0.90298
648		10		90	0.90298
673		88		11	0.923564
725	83		16		0.994512
1025		8	91		1.0
1027	91			8	1.0
1032		8		91	1.0
1035		91	8		1.0
1036			8	91	1.0
1040			8	91	1.0
1044	91			8	1.0
1320	12		87		0.992554
1406	75			25	0.996473
1409		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain