SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7072

Length: 1595 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7072

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	G-box-binding factor, putative	-	-	4.06377e-44	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	bzip domain class transcription factor	-	-	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Basic-leucine zipper domain	IPR004827	-	0.0	60%
Blast2go	bZIP transcription factor, bZIP-1	IPR011616	-	0.0	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB03

Fln msg:

Fln protein: EGGKATSGSANEAMSQSGDSGSDGSSEGSEEDNTQTESQVARKRSFDQMIVDGANAQSTNIQSYNTQAGEPYVTSGGHAMGNPISQAVAAVPLGSVTGKPATSGPITNLNIGMDYWNATPPGAITAVKGRGSTAGISTAIVPATAQLMPSGRDGVPPELWIQDERELKRQRRKQSNRESARRSRLRKQAECEELASKVETLTVENIALRNELNRMAEECKKLTAENASIMEQLKLRGEDMTTITEENGSTKISLQSVKPEGNGHFHDISRGINSNSTERNEQRQSETCDSNGKVHTLLDANARSDTG*

Protein Length: 309

Fln nts: AGAAGGTGGCAAGGCAACATCGGGATCTGCAAATGAGGCCATGTCACAAAGTGGGGACAGTGGCAGTGACGGTTCAAGCGAAGGAAGCGAGGAGGATAACACTCAAACTGAGTCACAAGTGGCGAGAAAGAGAAGTTTTGATCAAATGATAGTAGATGGAGCCAATGCTCAGAGTACCAATATTCAATCATACAATACTCAGGCTGGAGAACCCTATGTGACTTCCGGCGGGCATGCAATGGGTAATCCCATTAGTCAAGCTGTTGCTGCAGTTCCACTGGGCTCAGTTACAGGAAAACCAGCAACCAGTGGGCCTATCACTAATTTGAATATTGGTATGGACTATTGGAATGCCACTCCACCTGGAGCTATAACAGCTGTAAAAGGAAGGGGTAGTACAGCTGGTATTTCAACAGCAATAGTTCCAGCAACTGCTCAACTTATGCCGTCTGGTCGCGATGGTGTTCCTCCTGAGCTATGGATCCAGGATGAGAGGGAGCTGAAACGACAGAGGCGAAAGCAATCTAATAGGGAGTCAGCTAGACGTTCAAGGTTGCGGAAACAGGCTGAGTGTGAAGAATTGGCATCAAAAGTTGAGACCTTGACTGTAGAAAACATTGCACTTAGAAATGAACTAAACCGAATGGCAGAGGAATGCAAAAAACTAACCGCAGAGAATGCTTCCATAATGGAGCAACTGAAGTTGCGTGGAGAAGATATGACGACTATTACTGAAGAAAATGGTTCAACTAAGATATCATTGCAATCGGTAAAACCTGAAGGCAATGGCCATTTTCATGATATATCTAGGGGAATCAATTCGAATTCTACTGAAAGAAATGAACAAAGACAGAGTGAGACCTGTGATTCAAACGGGAAGGTTCATACGTTACTAGATGCGAATGCTCGTTCTGATACAGGTTAA___AATATGCCTCTAATGTGTTTTGATTTAAGTTAGTTGGCAGATGGAAGTTCGGGAGTCCATACCGTTTTGCTTGTTTTGGCCCTTGGGCTTTCTCCAAACTTTTCATGCACTAATATAGTGACCGATGCTTGTTAATCTAGAAATTTAATTAGCCTGGATTATGACCAAGACCATTTCTGTAAAAAAAATAACCCACGATAAACGTTAGAGGAGGTGGGTTCAGCCATAACTACGATCATATCATTATTTGGTACAGCTAACCTGCTATGAGTAGTTTCTTACTCGGGTCATGTAATTCTTCTCAATGGCCCAATTCAGTTCTAGTTTCTCCGTTACGAGACAACAGGGTGTCAAAATCATGAACAAAGATGGAATTTTTCATTATTTTGTCCTCGGAACAATCTGTGTGCAAAGATATAACTTTTGTTATTTGATACTCCACAAAGGATAACTTTGAAGGATGACTTTTATTATTAAATAATCCTCGATGTATTGTCATATGCAAAACATATTCGCCTCAGTTGTTTGGAATGGTGAGTTTTGCAGCTGTAGATTAAAGTAGCAATGTTGGACATTGGGTTGGAGCATCATATGCATTTGATTTTGCATTTGGGATAAACTTTATTGGCTAGGATCTAAGAAACTTGTCACATGCTATAATAGCTGCATG

Fln Alignment:

sp_v1.1_unigene7072___NTQTESQVARKRSFDQMIVDGANAQSTNIQSYNTQAGEPYVTSGGHAMGNPISQAVAAVPLGSVTGKPATSGPITNLNIGMDYWNATPPGAITAVKGRGSTAGISTAIVPATAQLMPSGRDGVPPELWIQDERELKRQRRKQSNRESARRSRLRKQAECEELASKVETLTVENIALRNELNRMAEECKKLTAENASIMEQLK
D5AB03______________NSPNGSHSGQKTRFEQGSTEADEAQNGHATSYNGQSANTNSASGSQVTTMNSSPTMAAVAMSLPVTSGTVTGPMTNLNIGMDYWCVAAPTPLSSMRGQLPVSSTTAAIIPS-AQNMPA----MGTELCLQDERELKRQRRKQSNRESARRSRMRKQAECEELARRVEELKNENVSLRTELARLREECEKLSSENNSLTEQLK

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
193		33		66	0.997452
278		75	25		0.996473
279			16	83	0.994512
298	85			14	0.993533
299		85	14		0.993533
300		85	14		0.993533
301	85		14		0.993533
701	80		20		0.995493
1109	20		20		0.999999
1128	90		10		0.90298
1221	93	4		2	0.985381
1222			6	93	0.999999
1225			4	92	0.987114
1227		95	4		0.997218
1228	4			95	0.997218
1230	95	4			0.997218
1231	95			4	0.997218
1236		95	5		0.997749
1237		95		5	0.997749
1238	95	5			0.997749
1240		5		95	0.997749
1381			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain