SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7058

Length: 1242 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7058

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB9 n=2 Tax=Picea RepID=A5JYF3_PICGL	-	-	69%
FL-Next	tr=R2R3-MYB transcription factor MYB9; Picea glauca (White spruce) (Pinus glauca).	-	-	86%
Blast2go	myb transcription factor	-	-	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A5JYF3

Fln msg: your sequence is shorter than subject: 228 - 416

Fln protein: RRDLGCHSSSENINNNNNNEETVSGHCNSAAAPGSSPGQQLHRPVPRQSAFNCYEAVKVQEEASASVSASGSAGAFDPPTSLSLSLPGSASSSENNSSGECSPTEQSSEMKYAKFQAYQQPTGYSFANPFPVGGYMKTEEAMAMMSTAVKIAIGQALPLIFQLPSGNSQEGCSGDSANYGGSLLSIMREMIAKEVQSYTNGSPCSNQGSGMDSVAPAYREVGLMLKK*

Protein Length: 229

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCTGAAAATATTAATAATAATAATAATAATGAAGAAACTGTTAGTGGCCATTGCAATTCGGCCGCTGCCCCGGGTTCGAGTCCCGGGCAGCAGCTGCATCGTCCTGTTCCGCGACAATCTGCTTTCAATTGTTATGAAGCTGTGAAAGTGCAGGAGGAAGCGTCTGCCTCTGTTTCTGCTTCTGGTTCGGCTGGCGCTTTCGATCCTCCAACCTCCTTAAGCCTGTCGCTGCCTGGAAGCGCTTCTTCAAGCGAGAATAACAGCAGTGGAGAATGCAGCCCCACAGAACAGAGCTCTGAAATGAAATATGCAAAGTTTCAGGCTTATCAACAACCGACTGGTTATTCGTTTGCCAATCCGTTTCCTGTTGGTGGCTACATGAAGACAGAGGAGGCCATGGCTATGATGTCGACTGCAGTCAAAATTGCAATCGGGCAAGCACTGCCTCTAATTTTCCAGCTGCCGAGCGGTAATTCCCAAGAAGGATGTTCGGGCGATTCTGCTAATTATGGTGGAAGTTTGCTGTCTATTATGCGGGAGATGATCGCGAAGGAGGTCCAGAGTTATACTAACGGATCGCCGTGTTCAAATCAGGGGTCCGGCATGGATTCTGTAGCTCCGGCGTACAGAGAAGTAGGCTTAATGCTGAAAAAATAA___GAAAAAGAGTCTTATGGCAGTGAAATGGAGAAATTCGAGAAATATGTCGTGGCCTTGTGGGATAATTTCGGAGGGTCTGATCAAAACAAGGGCGCAGAGATTGGAATTTATTTGTGGAAAAATGGATTTCTCCCAAAGGGGCAGAACTGTAAAGTGCTGAAGGCGATCTCGATTTCTGTTGATTTTCTTTTTGAATTGTATATCGTGAATCTGAATACTTTCTTCTTCTGCTGCGGCTTGTATACAAAATTGAATAAAAAGTTTTCTTTATCATAGAATAGCATAGCGCTATTTGATGCCATTCAAATAAATCTCAAAGAATGCGTTGGAATTATAGATAGCCCTGAATGCCTCGAATCTTATGGGGAAATCAACCGGTTGTTGATTAGGCCCATAGTTGGTTGCCTGTGAAGCAATCACATAGTAATTAGGATGTAATTAGTTCAGTCTGTTTATAGGAATTTGGAGCATAAGGCTGAAAGTTCAATGATGGTCTGAATTTTTTCAAATGATGGAATAGCGCCCTACCTCAGAGCTTCATGGGTTTACAGAGCTTAA

Fln Alignment:

sp_v1.1_unigene7058___TVSGHCNSAAAPGSSPGQQLHRPVPRQSAFNCYEAVKVQEEXXXXXXXXXXXXXFDPPTXXXXXXXXXXXXXXXXXXXXXXXTEQSSEMKYAKFQAYQQPTGYSFANPFPVGGYMKTEEAMAMMSTAVKIAIGQALPLIFQLPSGNSQEGCSGDSANYGGSLLSIMREMIAKEVQSYTNGSPCSNQGSGMDSVAPAYREVGLMLKK
A5JYF3______________TISGHCNSVA-PGSSPVQQLHRPVPRQSAFNCYEAVKMHEEASASVSASGSAGAFDPPTSLSLSLPGSGSFSENNSSGECSPIEQSFETKSAKFQAYQQQTGYSFADPFPVSGYLKTEEAMAMMSTAVKIAIGQALPLIFQLSSGNSHGGCSGDSSNFGGSLLSIMREMIAKEVQNYTNGSQCSNQGPGLNSVAPVFREVGLMLKK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1001	33		66		0.997452
1038		33	66		0.997452
1046	33	66			0.997452
1060		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
39	57	TAA TAA TAA TAA TAA TAA T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain