SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7040

Length: 1285 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7040

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase n=1 Tax=Lycium barbarum RepID=B6EWX9_LYCBA	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	udp-glucose glucosyltransferase	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL12

Fln msg: your sequence is shorter than subject: 368 - 476

Fln protein: PDGVPPVTCIVSDGLVSFPQKTARKLGVPRVSFWTHSACGFSTYFFAPLLMEKGYIPLKDEMSLTNGYMEQIIPCIPGMPQLRIKDLSFSLLRENMANFVRSQGQAALEADLILLNTFEDLDRPVIDELRARLPPSLYTIGPLGLFTESENDTISDISASMWTAETSCLKWLDSQEPSSVIYVSFGSISVMAREELLEIAWGLEASKQPFLWVIRPDLIDGQADVLLADFLEKVKDRSFLVKWAPQMKVLSHPSVGGFLTHSGWNSTLESICAGVPMISRPLIAEQPTNRRFVSEVWKIGMAMNEDVKREHVEDMVRRLMNGEEGRQMRKRIGELGDESMRAVCQGGSSYNNMEKLVEEINRGLTEP*

Protein Length: 369

Fln nts: ACCAGACGGTGTTCCTCCAGTAACATGTATTGTCTCCGATGGGCTTGTTTCATTTCCACAGAAAACAGCGAGAAAGCTCGGAGTTCCGAGAGTATCATTCTGGACACACAGTGCTTGTGGCTTCTCTACTTATTTCTTCGCGCCACTTCTAATGGAGAAAGGTTACATTCCTCTCAAAGATGAGATGAGTTTAACAAATGGATACATGGAACAAATAATCCCCTGTATCCCTGGAATGCCCCAGTTGCGCATCAAAGATCTGTCCTTTTCTTTGCTACGCGAGAACATGGCGAATTTTGTGAGGAGTCAGGGGCAGGCTGCTCTGGAAGCTGATTTGATATTACTTAATACCTTTGAGGACCTCGACCGTCCTGTAATTGATGAACTCAGGGCTAGACTTCCCCCCTCCTTGTATACGATAGGCCCACTAGGTTTATTCACAGAATCTGAAAATGATACAATATCTGATATCTCTGCAAGCATGTGGACTGCAGAAACAAGCTGTCTAAAATGGTTGGACTCTCAGGAACCCTCTTCAGTTATTTATGTTAGTTTTGGGAGTATAAGTGTCATGGCTCGTGAGGAGCTCTTAGAGATCGCATGGGGTCTGGAGGCGAGCAAGCAACCCTTCCTGTGGGTTATTCGTCCGGATTTGATTGATGGCCAGGCTGATGTGCTACTTGCTGACTTTCTGGAGAAGGTGAAAGACAGAAGTTTCTTGGTGAAATGGGCTCCTCAGATGAAAGTACTTTCACATCCTTCAGTGGGGGGCTTTCTGACTCATAGTGGATGGAACTCTACGCTGGAGAGCATCTGTGCTGGTGTGCCCATGATATCGCGGCCCTTAATTGCCGAGCAACCGACTAACAGGAGATTTGTTAGTGAAGTCTGGAAGATTGGAATGGCAATGAATGAAGATGTCAAGAGAGAACATGTGGAAGACATGGTAAGGAGATTGATGAATGGGGAGGAAGGTAGGCAGATGAGGAAGAGAATTGGTGAGTTGGGAGATGAGTCAATGAGAGCAGTGTGTCAAGGAGGATCTTCTTACAATAACATGGAGAAATTGGTTGAGGAAATAAACAGGGGATTGACAGAGCCATGA___TTAATTTATTGTATCTGTATGGATTGTGGATGATTTTCTGTTTATCATAATTAACATGTCACTTCAAATTGGACTCTCAGAGTCTTGATGGATGTAACTGTACATGGATGAAGGTTGAATAATTGTCTTGTTTTCAGTATCTCATACTCGTTTGAAATACAAACTTAAGGAGTTTCATCT

Fln Alignment:

sp_v1.1_unigene7040___PDGVPPVTCIVSDGLVSFPQKTARKLGVPRVSFWTHSACGFSTYFFAPLLMEKGYIPLKDEMSLTNGYMEQIIPCIPGMPQLRIKDLSFSLLRENMANFVRSQGQAALEADLILLNTFEDLDRPVIDELRARLPPSLYTIGPLGLFTESENDTISDISASMWTAETSCLKWLDSQEPSSVIYVSFGSISVMAREELLEIAWGLEASKQPFLWVIRPDLIDGQADVLLADFLEKVKDRSFLVKWAPQMKVLSHPSVGGFLTHSGWNSTLESICAGVPMISRPLIAEQPTNRRFVSEVWKIGMAMNEDVKREHVEDMVRRLMNGEEGRQMRKRIGELGDESMRAVCQGGSSYNNMEKLVEEINRGL
B8LL12______________PDGVPPVTCIVSDGLVSFPQKIARKLGVPRVSFWTHSACGFSTYFFAPLLVEKGYIPLKDERCLTNGYMEQIIPSIPGLPHLRIKDLSFSLLRMNMLEFVKSEGQAALEADLILLNTFEDLDRPVIDALRDRLPP-LYTIGPLGLLSESANDTISDISASMWTEETSCVKWLDCQDPSSVIYVSFGSITVMSREELLEIAWGLEASKQPFLWVIRPGLIDGQPDVLPTEFLERVKDRSFLVRWAPQMKVLSHPSVGGFLTHSGWNSTLESICAGVPMISRPFLAEQPTNGRFASEVWKIGVAMSEDVKREDVEDLVRRLMRGEEGQQMRKTVGELRDASIRAVREGGSSYTSMEKFVQEIKRGL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
451	75		25		0.996473
811	75		25		0.996473
896	62			37	1.0
1123	33	66			0.997452
1140	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain