SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7038

Length: 3356 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7038
ATGGGCTCACAAGTCTCGCTCGAAAGTCCAGAAGCTGAGTTTGAAACGAGAGGGGTCTGTCATTCTGCATGTGCACAGCTCGAGGTTCTAGCCAGCCCGTACACGCCCAAAATGTGTGTCAGCTATGCAGCCGAACTGAGACTGGACGCATTTTTTAATTAGAGCTCTCTCCGAATTCAGGTTTAAATTTCCCTCCATTCCCTTCATTGCCAGAGGTGGGGTGCAGCCAGTACATAGCGGAACTTCACATTGGGCTTCATTTCTGTGCAACGTGAACTGAAGCAATGGGGGGCTCTGGATGGTTTGCATTTCTGGTTTTGAGCGCGATGTTAGCTGTGGGTGTGGTGGAATGCGGCGTCACATACGACCATAAGGCTCTGGTGATTAACGGGCAACGCAGAATTCTCATTTCCGGATCCATTCACTACCCAAGGAGTACCGCTGAGATGTGGCCGGATCTCATCAAGAAGGCTAAGGATGGAGGGCTGGACGTCATACAGACTTATGTGTTCTGGAACATGCACGAGCCATCGCCTGGCAATTACAATTTTGACGGAAGATTAGATCTTGTGAAGTTTGTGAAGCTTGCCCAGGAGGAAGGACTTTATGTTCATCTTCGCATTGGCCCTTACGTTTGCGCAGAATGGAATTTCGGAGGCTTTCCAGTTTGGTTGAAATATGTTCCTGGCATCAGTTTCAGAACAGATAATGAGCCTTTCAAGAATGCAATGGAAGGTTTCACAAAAAAGGTTGTCGACATGATGAAAAGTGAAGGGCTGTTTGAATCGCAAGGTGGACCAATTATTATGGCCCAGGTAGAAAATGAGTATAAACCTGAAGAAATGGTGTATGGGTCTGCTGGAGTGCAATATATGAATTGGGCTGCTCAGATGGCTGTGGGAATGGATACGGGTGTTCCTTGGGTTATGTGCAAACAAGATGATGCACCAGACCCTGTGATAAACACTTGCAATGGTTTCTATTGTGACAACTTTGTACCTAACAAGCCTTACAAGCCAACAATGTGGACAGAAGCCTGGAGTGGCTGGTATACTGAATTTGGAGGTGCAACTCCTCGTAGACCGGTGGAAGATCTGGCCTTTGCAGTTGCTCGCTTTTTAGTGAAGGGTGGATCTTTTGTAAACTACTACATGTACCATGGAGGAACAAATTTTGGCCGCACAGCAGGCGGGCCTTTCATTGCAACCTCCTATGACTATGATGCACCCATAGATGAATATGGGCTTATTAGACAGCCAAAATGGGGTCATCTTAAGGAATTACACAAAGCCATAAAGCTCTGTGAGACTGCTTTAGTTAGTGGTGATCCTGTTGTTACGTCCCTTGGGCACTTCCAGCAAGCTTATGCATATTATGCAGGAGCTGGAAATTGTGCCGCTGCATTTCTTGTAAATTTTGATTCAAATAATGTTGGGAGAGTCATCTTTAATGGTCAGCACTATAAAATAGCTCCGTGGTCTGTTAGCATTCTCCCTGATTGCAGAAATGTGGTTTTCAATACTGCAAAGGTTGACGTACAAACATCAAAAATGAAAATGGAACCTGTTGGAGGGTTTGGTTGGGAATCTCTTGATGAAAATATTGCCTCTTTTGAAGAGAATTCCATCACTGCAGTGGGTTTGCTAGAGCAGATAAACATTACAAGAGATAATACTGATTACTTGTGGTACATAACAAGTGTGGAAGTTGATGAAGATGAACCCTTTATAAAGAATGGTGCTCTCCCAGTCCTTACTGTACAGTCAGCAGGCGATGCGTTACATGTCTTCATAAATGGTGATCTTGCAGGGAGTGAATATGGAAGGAGGGAGAACCCGAAAGTGAGGTTTTCATCTGGTGTTAAGTTAAATGTTGGAACAAACAAAATTTCTCTCTTGAGTATGACGGTTGGTCTACAGAATATTGGGCCCCATTTTGAGATGGCAAATGCAGGAGTTTTGGGTCCAATAACCCTGAGTGGTTTCAAGGACGGAACGCGGGACTTGTCCTCACAAAGGTGGTCATATCAGGTTGGATTGAAAGGTGAATCAATGAATCTCCACACCAGTGGAGATAACAATGTTGATTGGATGAAAGATGTAGCGATTCCTCAAAGACAGCCTCTAACATGGTATAAGGCCATGTTTGATGCACCAGCTGGCGAAGATCCATTAGGATTGGATTTAAGCACCATGGGAAAAGGCCAAGCTTGGGTAAATGGGCAGAGCATTGGACGGTACTGGCCTTCATATCTTGCGGAAGGTGTCTGCTCAGATGGATGTTCTTACGAAGGAACTTACCGACCTCACAAATGTGCCACAAACTGTGGCCAATCTTCTCAGCGCTGGTACCATGTTCCTCGATCGTGGCTGCAGCCTTCGGGAAATGTGTTGGTGCTGTTTGAGGAAATCGGAGGAAATCCTTCTGGAGTTTCACTTGTTAGAAGATCTGTAGATAGTGTGTGTGCTCATGTATCTGAATCACATTCTCAATCTATCAACTTTTGGCGTCTTGAGAGTACTGACCAAGTACAGAAATTGCACGTACCAAAGGTTCACCTCCAATGTTCCAAAGGACAACAAATTTCGGCCATTAAGTTTGCAAGTTTTGGTACTCCACAGGGAGAATGTGGAAGTTTCCAACAAGGAAACTGCCATTCTGCAAATTCAGGTGCAATTATAAAGAAGAAATGCATGGGGTTACAAAAATGCTCGTTAAGTATTTCTGAGAAGCTTTTTGGTGGAGATCCATGCCCAGGGGTTAGAAAGGACCTTGCTATTGAAGCCGCTTGTAGTTAGATGCCCAATTGGAGGACCTAATGGTCGAAGGAGTCATTTGATTTTTCTAGGGAGGACTGAATGGTCGAAGGAGCCATTTCATTTTTCTTGGGACTTTTTCTTCATGGTACGTTCTTTAAACTAAGGTGAAGTTCTTTATTGTTTCTTCGCACACAAGCTTGGAGGAATGTTAGTTTATACTAACTAATAAGGTGACAGAGCTGGGCTTTGCGTTTTTTAAGAAAGGCTCTGTTGATGGGCATTGGTTATTAAAAATCTCAAGGTCTTGCTGGTCAATAAAGCATTCGACTCTTTGCTATTATTACGTTAAAGAGTTGGGTAAAGTGCTTTCTTTGTATTATTATTAGATTAAACAGTTGGATAAATTTCTTACTTTGTATTATATCATGATGCAAATAAAGCCTTTGTATTATTCAGACTTACATGTCCAGTACGTTTTATTTATTGTATATACATTTTTAATTTTACATTGCAGTTCAAAGCGCATAAGGCTTACATTAGTTTCTATCTAGGTCGCTTTGATTCCGAATGCTAAATTAAGCGCTATTTTCTACATTT

Ace file of the UniGene sp_v1.1_unigene7038

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=B8LLU8_PICSI	-	-	91%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	beta-galactosidase like protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-galactosidase.	EC:3.2.1.23	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	79%
Blast2go	Other glycan degradation	00511	79%
Blast2go	Glycosaminoglycan degradation	00531	79%
Blast2go	Sphingolipid metabolism	00600	79%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	beta-galactosidase activity	GO:0004565	Molecular Function	79%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Blast2go	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	79%
Blast2go	Glycoside hydrolase, family 35	IPR001944	-	79%
Blast2go	Galactose-binding domain-like	IPR008979	-	79%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	79%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	79%
Blast2go	Glycoside hydrolase, family 35, conserved site	IPR019801	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLU8

Fln msg:

Fln protein: MGGSGWFAFLVLSAMLAVGVVECGVTYDHKALVINGQRRILISGSIHYPRSTAEMWPDLIKKAKDGGLDVIQTYVFWNMHEPSPGNYNFDGRLDLVKFVKLAQEEGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKNAMEGFTKKVVDMMKSEGLFESQGGPIIMAQVENEYKPEEMVYGSAGVQYMNWAAQMAVGMDTGVPWVMCKQDDAPDPVINTCNGFYCDNFVPNKPYKPTMWTEAWSGWYTEFGGATPRRPVEDLAFAVARFLVKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGLIRQPKWGHLKELHKAIKLCETALVSGDPVVTSLGHFQQAYAYYAGAGNCAAAFLVNFDSNNVGRVIFNGQHYKIAPWSVSILPDCRNVVFNTAKVDVQTSKMKMEPVGGFGWESLDENIASFEENSITAVGLLEQINITRDNTDYLWYITSVEVDEDEPFIKNGALPVLTVQSAGDALHVFINGDLAGSEYGRRENPKVRFSSGVKLNVGTNKISLLSMTVGLQNIGPHFEMANAGVLGPITLSGFKDGTRDLSSQRWSYQVGLKGESMNLHTSGDNNVDWMKDVAIPQRQPLTWYKAMFDAPAGEDPLGLDLSTMGKGQAWVNGQSIGRYWPSYLAEGVCSDGCSYEGTYRPHKCATNCGQSSQRWYHVPRSWLQPSGNVLVLFEEIGGNPSGVSLVRRSVDSVCAHVSESHSQSINFWRLESTDQVQKLHVPKVHLQCSKGQQISAIKFASFGTPQGECGSFQQGNCHSANSGAIIKKKCMGLQKCSLSISEKLFGGDPCPGVRKDLAIEAACS*

Protein Length: 839

Fln nts: ATGGGCTCACAAGTCTCGCTCGAAAGTCCAGAAGCTGAGTTTGAAACGAGAGGGGTCTGTCATTCTGCATGTGCACAGCTCGAGGTTCTAGCCAGCCCGTACACGCCCAAAATGTGTGTCAGCTATGCAGCCGAACTGAGACTGGACGCATTTTTTAATTAGAGCTCTCTCCGAATTCAGGTTTAAATTTCCCTCCATTCCCTTCATTGCCAGAGGTGGGGTGCAGCCAGTACATAGCGGAACTTCACATTGGGCTTCATTTCTGTGCAACGTGAACTGAAGCA_-_ATGGGGGGCTCTGGATGGTTTGCATTTCTGGTTTTGAGCGCGATGTTAGCTGTGGGTGTGGTGGAATGCGGCGTCACATACGACCATAAGGCTCTGGTGATTAACGGGCAACGCAGAATTCTCATTTCCGGATCCATTCACTACCCAAGGAGTACCGCTGAGATGTGGCCGGATCTCATCAAGAAGGCTAAGGATGGAGGGCTGGACGTCATACAGACTTATGTGTTCTGGAACATGCACGAGCCATCGCCTGGCAATTACAATTTTGACGGAAGATTAGATCTTGTGAAGTTTGTGAAGCTTGCCCAGGAGGAAGGACTTTATGTTCATCTTCGCATTGGCCCTTACGTTTGCGCAGAATGGAATTTCGGAGGCTTTCCAGTTTGGTTGAAATATGTTCCTGGCATCAGTTTCAGAACAGATAATGAGCCTTTCAAGAATGCAATGGAAGGTTTCACAAAAAAGGTTGTCGACATGATGAAAAGTGAAGGGCTGTTTGAATCGCAAGGTGGACCAATTATTATGGCCCAGGTAGAAAATGAGTATAAACCTGAAGAAATGGTGTATGGGTCTGCTGGAGTGCAATATATGAATTGGGCTGCTCAGATGGCTGTGGGAATGGATACGGGTGTTCCTTGGGTTATGTGCAAACAAGATGATGCACCAGACCCTGTGATAAACACTTGCAATGGTTTCTATTGTGACAACTTTGTACCTAACAAGCCTTACAAGCCAACAATGTGGACAGAAGCCTGGAGTGGCTGGTATACTGAATTTGGAGGTGCAACTCCTCGTAGACCGGTGGAAGATCTGGCCTTTGCAGTTGCTCGCTTTTTAGTGAAGGGTGGATCTTTTGTAAACTACTACATGTACCATGGAGGAACAAATTTTGGCCGCACAGCAGGCGGGCCTTTCATTGCAACCTCCTATGACTATGATGCACCCATAGATGAATATGGGCTTATTAGACAGCCAAAATGGGGTCATCTTAAGGAATTACACAAAGCCATAAAGCTCTGTGAGACTGCTTTAGTTAGTGGTGATCCTGTTGTTACGTCCCTTGGGCACTTCCAGCAAGCTTATGCATATTATGCAGGAGCTGGAAATTGTGCCGCTGCATTTCTTGTAAATTTTGATTCAAATAATGTTGGGAGAGTCATCTTTAATGGTCAGCACTATAAAATAGCTCCGTGGTCTGTTAGCATTCTCCCTGATTGCAGAAATGTGGTTTTCAATACTGCAAAGGTTGACGTACAAACATCAAAAATGAAAATGGAACCTGTTGGAGGGTTTGGTTGGGAATCTCTTGATGAAAATATTGCCTCTTTTGAAGAGAATTCCATCACTGCAGTGGGTTTGCTAGAGCAGATAAACATTACAAGAGATAATACTGATTACTTGTGGTACATAACAAGTGTGGAAGTTGATGAAGATGAACCCTTTATAAAGAATGGTGCTCTCCCAGTCCTTACTGTACAGTCAGCAGGCGATGCGTTACATGTCTTCATAAATGGTGATCTTGCAGGGAGTGAATATGGAAGGAGGGAGAACCCGAAAGTGAGGTTTTCATCTGGTGTTAAGTTAAATGTTGGAACAAACAAAATTTCTCTCTTGAGTATGACGGTTGGTCTACAGAATATTGGGCCCCATTTTGAGATGGCAAATGCAGGAGTTTTGGGTCCAATAACCCTGAGTGGTTTCAAGGACGGAACGCGGGACTTGTCCTCACAAAGGTGGTCATATCAGGTTGGATTGAAAGGTGAATCAATGAATCTCCACACCAGTGGAGATAACAATGTTGATTGGATGAAAGATGTAGCGATTCCTCAAAGACAGCCTCTAACATGGTATAAGGCCATGTTTGATGCACCAGCTGGCGAAGATCCATTAGGATTGGATTTAAGCACCATGGGAAAAGGCCAAGCTTGGGTAAATGGGCAGAGCATTGGACGGTACTGGCCTTCATATCTTGCGGAAGGTGTCTGCTCAGATGGATGTTCTTACGAAGGAACTTACCGACCTCACAAATGTGCCACAAACTGTGGCCAATCTTCTCAGCGCTGGTACCATGTTCCTCGATCGTGGCTGCAGCCTTCGGGAAATGTGTTGGTGCTGTTTGAGGAAATCGGAGGAAATCCTTCTGGAGTTTCACTTGTTAGAAGATCTGTAGATAGTGTGTGTGCTCATGTATCTGAATCACATTCTCAATCTATCAACTTTTGGCGTCTTGAGAGTACTGACCAAGTACAGAAATTGCACGTACCAAAGGTTCACCTCCAATGTTCCAAAGGACAACAAATTTCGGCCATTAAGTTTGCAAGTTTTGGTACTCCACAGGGAGAATGTGGAAGTTTCCAACAAGGAAACTGCCATTCTGCAAATTCAGGTGCAATTATAAAGAAGAAATGCATGGGGTTACAAAAATGCTCGTTAAGTATTTCTGAGAAGCTTTTTGGTGGAGATCCATGCCCAGGGGTTAGAAAGGACCTTGCTATTGAAGCCGCTTGTAGTTAG___ATGCCCAATTGGAGGACCTAATGGTCGAAGGAGTCATTTGATTTTTCTAGGGAGGACTGAATGGTCGAAGGAGCCATTTCATTTTTCTTGGGACTTTTTCTTCATGGTACGTTCTTTAAACTAAGGTGAAGTTCTTTATTGTTTCTTCGCACACAAGCTTGGAGGAATGTTAGTTTATACTAACTAATAAGGTGACAGAGCTGGGCTTTGCGTTTTTTAAGAAAGGCTCTGTTGATGGGCATTGGTTATTAAAAATCTCAAGGTCTTGCTGGTCAATAAAGCATTCGACTCTTTGCTATTATTACGTTAAAGAGTTGGGTAAAGTGCTTTCTTTGTATTATTATTAGATTAAACAGTTGGATAAATTTCTTACTTTGTATTATATCATGATGCAAATAAAGCCTTTGTATTATTCAGACTTACATGTCCAGTACGTTTTATTTATTGTATATACATTTTTAATTTTACATTGCAGTTCAAAGCGCATAAGGCTTACATTAGTTTCTATCTAGGTCGCTTTGATTCCGAATGCTAAATTAAGCGCTATTTTCTACATTT

Fln Alignment:

sp_v1.1_unigene7038___MGGSGWFAFLVLSAMLAVGVVECGVTYDHKALVINGQRRILISGSIHYPRSTAEMWPDLIKKAKDGGLDVIQTYVFWNMHEPSPGNYNFDGRLDLVKFVKLAQEEGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKNAMEGFTKKVVDMMKSEGLFESQGGPIIMAQVENEYKPEEMVYGSAGVQYMNWAAQMAVGMDTGVPWVMCKQDDAPDPVINTCNGFYCDNFVPNKPYKPTMWTEAWSGWYTEFGGATPRRPVEDLAFAVARFLVKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGLIRQPKWGHLKELHKAIKLCETALVSGDPVVTSLGHFQQXXXXXXXXXXXXXXFLVNFDSNNVGRVIFNGQHYKIAPWSVSILPDCRNVVFNTAKVDVQTSKMKMEPVGGFGWESLDENIASFEENSITAVGLLEQINITRDNTDYLWYITSVEVDEDEPFIKNGALPVLTVQSAGDALHVFINGDLAGSEYGRRENPKVRFSSGVKLNVGTNKISLLSMTVGLQNIGPHFEMANAGVLGPITLSGFKDGTRDLSSQRWSYQVGLKGESMNLHTSGDNNVDWMKDVAIPQRQPLTWYKAMFDAPAGEDPLGLDLSTMGKGQAWVNGQSIGRYWPSYLAEGVCSDGCSYEGTYRPHKCATNCGQSSQRWYHVPRSWLQPSGNVLVLFEEIGGNPSGVSLVRRSVDSVCAHVSESHSQSINFWRLESTDQVQKLHVPKVHLQCSKGQQISAIKFASFGTPQGECGSFQQGNCHSANSGAIIKKKCMGLQKCSLSISEKLFGGDPCPGVRKDLAIEAACS
B8LLU8______________MGGTGWFAFLVLSVMLAVGGVECGVTYDHKALVINGERRILISGSIHYPRSTAEMWPDLFRKAKDGGLDVIQTYVFWNMHEPSPGNYNFEGRFDLVKFVKLAQEAGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKNAMEGFTKKVVDLMKSEGLFESQGGPIILAQVENEYKPEEMEYGLAGAQYMNWAAQMAVGMDTGVPWVMCKQDDAPDPVINTCNGFYCDNFVPNKPYKPTMWTEAWSGWYTEFGGASPHRPVEDLAFAVARFFVKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGLIRQPKWGHLKELHKAIKLCEPALVSGDPVVTSLGHFQQAYVYSAGAGNCAA-FIVNYDSNSVGRVIFNGQRYKIAPWSVSILPDCRNVVFNTAKVDVQTSQMKMTPVGGFGWESIDENIASFEDNSISAVGLLEQINITRDNTDYLWYITSVEVDEDEPFIKNGGLPVLTVQSAGDALHVFINDDLAGSQYGRKENPKVRFSSGVRLNVGTNKISLLSMTVGLQNIGPHFEMANAGVLGPITLSGFKDGTRDLSSQRWSYQIGLKGETMNLHTSGDNTVEWMKGVAVPQSQPLRWYKAEFDAPAGEDPLGLDLSSMGKGQAWVNGQSIGRYWPSYLAEGVCSDGCSYEGTYRPHKCDTNCGQSSQRWYHVPRSWLQPSGNTLVLFEEIGGNPSGVSLVTRSVDSVCAHVSESHSQSINFWRLESTDQVQKLHIPKVHLQCSKGQRISAIKFASFGTPQGLCGSFQQGDCHSPNSVATIQKKCMGLRKCSLSVSEKIFGGDPCPGVRKGVAIEAVCS

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
750	80		20		0.995493
773	20			80	0.995493
797	11			88	0.923564
1155	90		10		0.90298
1817		11		88	0.923564
2686	80	20			0.995493
2739		6		93	0.999453
2740			6	93	0.999453
2742		6	93		0.999453
2748		6	93		0.999453
2749	93	6			0.999453
2751		93	6		0.999453
2752		93	6		0.999453
2753	93	6			0.999453
2789	2	97			0.979771
2790		2	97		0.979771
3226	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain