SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7024

Length: 514 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene7024
ACCGTCTGTATGACTGGATCACAGATTATGCAATGCATTTCCCACATTCGAAGTCAAGTACATGGGTTTTAGGCTTCTCTTCACGGTGGATCCTGCAAACATTGAGTACATTCTCAAGACCAATTTCTCCAATTATGTCAAAGGCCCTGCAGCTCATGAGATACAATATGACTTGCTGGGTGATGGCATCTTTAATTCGGATGGAGAAATGTGGAAGCTCCAACGCAAGTCTGCCAGCCTTGAGTTTTCATCTAAGATGTTACGAGATTACAGTACATATACCTTCAGGAAATATGCCCTCAAATTAGCCGTGATTTTGGAGGGACAGATAGCCCACAGTAATAACAAATTGGTAGCCAATATGCAGGATCTGTTCATGCGGCTGACATTTGATTCAATATGCGAGCTGGGGTTTGGGGTTGAAATAGGTTCTCTGGATTCCTCCCTTCCAGACGTTCCATTTGCTTCGGCTTTTGACAGATCTAACGCCCTCTGCGCCTCTCGATACTTCGAC

Ace file of the UniGene sp_v1.1_unigene7024 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CYP704B3; cytochrome P450	-	-	3.0e-38	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	cytochrome p450	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alkane 1-monooxygenase.	EC:1.14.15.3	-	0.0	70%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	70%
Blast2go	Arachidonic acid metabolism	00590	70%
Blast2go	Retinol metabolism	00830	70%
Blast2go	Metabolic pathways	01100	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	0.0	70%
Blast2go	alkane 1-monooxygenase activity	GO:0018685	Molecular Function	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT68

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 295 aas, your sequence is shorter than subject: 171 - 543

Fln protein: PSV*LDHRLCNAFPTFEVKYMGFRLLFTVDPANIEYILKTNFSNYVKGPAAHEIQYDLLGDGIFNSDGEMWKLQRKSASLEFSSKMLRDYSTYTFRKYALKLAVILEGQIAHSNNKLVANMQDLFMRLTFDSICELGFGVEIGSLDSSLPDVPFASAFDRSNALCASRYFD

Protein Length: 172

Fln nts: ACCGTCTGTATGACTGGATCACAGATTATGCAATGCATTTCCCACATTCGAAGTCAAGTACATGGGTTTTAGGCTTCTCTTCACGGTGGATCCTGCAAACATTGAGTACATTCTCAAGACCAATTTCTCCAATTATGTCAAAGGCCCTGCAGCTCATGAGATACAATATGACTTGCTGGGTGATGGCATCTTTAATTCGGATGGAGAAATGTGGAAGCTCCAACGCAAGTCTGCCAGCCTTGAGTTTTCATCTAAGATGTTACGAGATTACAGTACATATACCTTCAGGAAATATGCCCTCAAATTAGCCGTGATTTTGGAGGGACAGATAGCCCACAGTAATAACAAATTGGTAGCCAATATGCAGGATCTGTTCATGCGGCTGACATTTGATTCAATATGCGAGCTGGGGTTTGGGGTTGAAATAGGTTCTCTGGATTCCTCCCTTCCAGACGTTCCATTTGCTTCGGCTTTTGACAGATCTAACGCCCTCTGCGCCTCTCGATACTTCGAC

Fln Alignment:

sp_v1.1_unigene7024___FPTFEVKYMGFRLLFTVDPANIEYILKTNFSNYVKGPAAHEIQYDLLGDGIFNSDGEMWKLQRKSASLEFSSKMLRDYSTYTFRKYALKLAVILEGQIAHSNNKLVANMQDLFMRLTFDSICELGFGVEIGSLDSSLPDVPFASAFDRSNALCASRYFD
C0PT68______________FPTFEAKYIGFRLLFTVDPANVEYILKTNFSNYVKGPAAHEIQYDLLGDGIFNTDGEMWKLQRKSASLEFSSKMLRDYSADAFRKYALKLAMILQGQLAHNNN--VANMQDMFMRMTFDSICEVGFGVEIGSLASSLPDVPFASAFDRSNALCASRYFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain