SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7016

Length: 1773 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene7016 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=E0CQ10_VITVI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	76%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phospholipid/glycerol acyltransferase	IPR002123	-	0.0	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ53

Fln msg: your sequence is shorter than subject: 382 - 472

Fln protein: WRSPSSDGERKVDSFNVQASATVSPEALKEMEAKYAAYVRHDIYGTMGKGPLPLKEKAILLIALITLTFPVRLVLGFIILLTYYIICKLCTLFSAPNREDDQEDYAHMSGIRRAIIVASGRFLSRALLFTLGFYWITETSRIPDPAIHSQDGLCVRRVRENEGDAVDSSYQPGAIVSNHISYLDILYHMSASFPSFVAKRSVARLPLVGLMSKCLGCVYVQRESKSSNFKGVSGVVTERLQAAHRSKLAPMMLLFPEGTTTNGDFLLPFKTGAFLARTPVLPVILRYPYRRFSPAWDTISGVRHVVLLLCQFVNYLEVTRLPIYCPSEKEKNDSKLYANNVRKLMAVEGNLTMSDIGLPEKRIYHAALHGRFRDNKSVVEG*

Protein Length: 383

Fln nts: GATGGAGGTCCCCTTCCTCCGATGGGGAGAGGAAAGTAGACAGTTTTAATGTTCAAGCATCAGCAACTGTTTCTCCAGAGGCTTTGAAGGAGATGGAAGCCAAGTATGCTGCATATGTGAGGCATGACATATATGGTACAATGGGGAAGGGTCCGCTGCCTTTGAAGGAGAAGGCTATTCTGCTAATTGCATTGATCACCCTGACCTTCCCAGTCAGATTGGTATTGGGGTTCATCATTCTGCTCACCTATTATATCATTTGTAAGCTCTGTACCCTCTTCTCCGCTCCCAACCGGGAAGATGATCAGGAGGATTATGCTCACATGTCGGGAATCAGGAGGGCCATTATAGTTGCGTCTGGGCGTTTTCTTTCCAGGGCTCTGCTTTTTACCCTGGGTTTTTATTGGATTACGGAGACCAGCAGAATACCTGATCCTGCCATTCATTCCCAAGATGGCCTCTGTGTGAGGCGGGTGAGAGAGAATGAAGGTGATGCTGTGGATAGTTCATATCAACCGGGGGCAATTGTTTCAAACCACATTTCCTATTTGGATATTTTATATCACATGTCAGCTTCATTTCCCAGTTTTGTTGCAAAGAGGTCAGTGGCTAGACTTCCCCTTGTGGGTCTTATGAGCAAGTGCTTAGGCTGTGTGTATGTTCAACGAGAATCAAAATCTTCCAACTTCAAAGGTGTTTCAGGTGTAGTGACTGAAAGGCTTCAAGCAGCTCATCGCAGTAAGCTTGCTCCAATGATGCTGCTTTTTCCAGAAGGAACAACTACAAATGGAGACTTCCTTCTTCCCTTTAAGACTGGGGCATTTTTAGCCAGGACTCCAGTGCTGCCCGTGATCTTAAGATACCCATATCGACGCTTTAGTCCAGCATGGGATACTATATCTGGAGTACGGCATGTAGTCTTGCTACTGTGTCAGTTTGTAAATTATTTGGAAGTAACTCGGTTGCCAATCTATTGTCCATCAGAGAAAGAAAAGAATGATTCTAAATTGTATGCTAACAATGTCCGTAAGTTGATGGCAGTTGAGGGTAACCTTACAATGTCAGACATTGGACTACCTGAAAAACGGATTTATCATGCTGCTCTGCACGGTCGCTTTCGAGATAATAAATCTGTGGTTGAAGGTTAA___TTTCGTCCTTGTTATGTGGCTTCAGATTGACTTCGAGAAGAAAGAGAATGGCTGATCTTTGCTCTGCTGGCATTTGATACAGAAATCATAATCATTGTGTAGAACAGCGCAGATATGTCTCTAATTTTTTCATACATTTCTGCTGTCAGAGTTTGGGAACGATATATCTTTTCCCCGTTTCACAGCATGCATGGTCAGAAGACTTTGCAACATTATTTAATTTTTATACTGGAGTTGCTCGTGATAATAGTTGTATGCAAGTTACATAATTCAGTGAGGTGGTGGATTATTATTTTTATTTTCTATAGTGCTCTTCCCAGTTAGCAGTATAAAGACGAGAATTTCCTCAGGTGATCGGTTGTTTTTATCTTCTATTCTGTCTTATCACGTAATTGGATAAAACTGAGCCAGAAAATCATGTAATGGAATCAATTTTTTTGTATGAGATGACTAATGAACAATATAAAAACAAGAGAATTTCATCCGGGGATGGGTTATTTTTATCTTATATACCGTCTTAGGATGTAACTGGATGAAATTCAGCCAAAGAATTCTGTAATGTAATCCATTGTTACTAAGTGTGTATGGTGTAGTGAATGAACATTTATTTCCTGTGTACCTGGAA

Fln Alignment:

sp_v1.1_unigene7016___SPSSDGERKVDSFNVQASATVSPEALKEMEAKYAAYVRHDIYGTMGKGXXXXXXXXXXXXXXXXXTFPVRLVLGFIILLTYYIICKLCTLFSAPNREDDQEDYAHMSGIRRAIIVASGRFLSRALLFTLGFYWITETSRIPDPAIHSQDGLCVRRVRENEGDAVDSSYQPGAIVSNHISYLDILYHMSASFPSFVAKRSVARLPLVGLMSKCLGCVYVQRESKSSNFKGVSGVVTERLQAAHRSKLAPMMLLFPEGTTTNGDFLLPFKTGAFLARTPVLPVILRYPYRRFSPAWDTISGVRHVVLLLCQFVNYLEVTRLPIYCPSEKEKNDSKLYANNVRKLMAVEGNLTMSDIGLPEKRIYHAALHGRFRDNKSVVEG
B8LQ53______________SPSSDGEKKVDSFTVQGSATVSSEALKEMEAKYAAFLRHDIYGTMGRGPLPLKEKALLLFGLIIL-LPIRMVSGFIILLTYYLICRLCTLFSAPNREDDQEDYAHMSGVRRTIIVLSGRFLSRALFFTLGFYWITETRRIPDPATQSQDGLCAKEVRENEGEAEDSSYQPGAIVSNHISYLDILYHMSASFPSFVAKRSVARLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVTERLEAAHHSKLAPMMMLFPEGTTTNGDFLLPFKTGAFLARTPVLPVILRYPYQRFSPAWDTISGVRHVVLLLCQFVNYLEVIRLPVYCPSEEEKNDPKLYANNVRKLMALEGNLTMSDIGLPEKRIYHAALHGCFPDNKSVVEG

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
844	80		20		0.995493
855	80			20	0.995493
859		80	20		0.995493
868	20		80		0.995493
869	20			80	0.995493
870	80		20		0.995493
871		80	20		0.995493
874	20	80			0.995493
875	80	20			0.995493
878		20		80	0.995493
879	80		20		0.995493
1594	50		50		1.0
1642	14	85			0.993533
1643	85		14		0.993533
1644		14		85	0.993533
1645	85	14			0.993533
1646	14			85	0.993533
1648			14	85	0.993533
1653		14		85	0.993533
1655	14	85			0.993533
1657			14	85	0.993533
1719		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain