SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7006

Length: 1545 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7006

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histidine-containing phosphotransfer protein n=1 Tax=Catharanthus roseus RepID=Q94KS0_CATRO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	histidine-containing phosphotransfer	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	83%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	83%
Blast2go	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPP0

Fln msg:

Fln protein: MAVSQMQQRYINFTNSLFQEGFVDEQFTQLQQLQDESNPDFVAEVVFLFFEDSDKLLADLSKTLNQEPVDFKRVDGCVHQFKGSSSSIGARRVMNTCVTFRAFCQDKNREGCLYCLQQMKQECYLVKNKLETLFQLEKQIVEAGGTVPMAE*

Protein Length: 153

Fln nts: CGTCGTGACCATGGGGAACATCCATTTCTTAGGGCGAATGGATTTGCGATTTTGGCGCAGAAGACAGAGGTGAGCAGGGATGTGAGAAGGGTACAAATGTCAAGCTCTCTTCTTCTATTTCGTGGCTTCAACGGATTGATCATTTATCATTAATATTACGGATCTCACGGCTATTGGCAGAAATTTCCGAGATCTCGTTCTGTATTTCTCTGAATCTTTCAGGCTCCACCTTAATTCAGCCCACACGAAGAAGAAGAGGTAGCAGAGGGAGGG_-_ATGGCAGTTTCACAGATGCAGCAGCGTTACATTAATTTCACTAATTCTCTTTTCCAGGAGGGATTCGTGGATGAACAATTCACACAACTTCAGCAGCTGCAAGATGAGAGTAATCCTGATTTTGTTGCGGAGGTTGTTTTTTTGTTCTTTGAGGATTCTGATAAACTACTGGCCGACTTGTCAAAGACTCTCAATCAGGAACCAGTTGATTTCAAGAGAGTTGATGGCTGTGTGCACCAATTCAAGGGTAGCAGCTCAAGTATAGGAGCGCGGCGAGTAATGAATACATGTGTAACGTTTCGTGCATTTTGTCAAGATAAAAATAGAGAAGGATGCTTATATTGCTTACAACAAATGAAGCAGGAGTGTTACCTCGTGAAAAACAAGCTGGAGACTTTGTTTCAGCTTGAGAAACAGATTGTAGAAGCTGGTGGAACTGTTCCTATGGCAGAGTAA___GCACTGAGACATAATATTCCATTTCTGGGACAATTAAGAACCGGAGGAAAAAGTGAGTTACAATCCTGGAGTGGCTGGGTAACGGCTAGAATTAATGCTAAAATTTCCACTTTTGTTTCTGTAAATTATAAATATGTTAGCATCTATCCTGAATAGATCAACAAAGCAAGTGCTATAGCGATGAACAGCTGGTGGTTGTGCCAGCTGGTAATGAATTCCATTTCTCTAAGTCGTGCCATATATACATGGAAGAGTGAAATTGGCATCAGTGATATGGGCCAGTAGATGAGACCTCTATTACCATGGGAGGTTGGTTGTTTTTACTCTGATGCATTATTTGCAAGGAAGGTTATGTAATAGCTGTCAACTTTACTAAATTGTGCTAGTTCATTTTGATCAATGCATGAGTTCAAGTCTTAGGAATTCTTAACAAAATTCATGTGGGTTGACAATTATTTTGAAGTTTATAGAAATTAGAGCTCAATTAAGGATTGTGTACAAAGGGAAATGGTTGGCTTTATATGGTGTCCGTATGTGTTTAGTTTGCCATGTGAAAACTGAAAACATGTCAATGAACGGCAAAACGGATTTTCAATTGCCGAAACCAATACATACGAGGCTTCTCATGCCTGATTAAGTGTGGTTTACATGTCATGAACTGATGCGTGATAGCAGAATCTCTCCACATGCTTGAGTCATAGATTTACTGTTACGGTTAACTCTGCTCTGACATGCCATCAATGCTTGTGAAGCCAATACAAGAGGGGTCCATGCATGCTTTATTGTATCTCGAGTTAGATGTTGATGGTGAAGTGG

Fln Alignment:

sp_v1.1_unigene7006___SQMQQRYINFTNSLFQEGFVDEQFTQLQQLQDESNPDFVAEVVFLFFEDSDKLLADLSKTLNQEPVDFKRVDGCVHQFKGSSSSIGARRVMNTCVTFRAFCQDKNREGCLYCLQQMKQECYLVKNKLETLFQLEKQIVEAGGTVPMAE
A9NPP0______________SQMQQRYINFTTSLFQEGFVDEQFTQLQQLQDESNPDFVAEVVCLFFEDSEKLLGDLSKTLNQEPVDFKRVDGCVHQFKGSSSSIGARRVMNTCVTFRAFCQDKNREGCLYCLQQMKQECYLVKNKLETLFQLEKQIVEAGGTVPMAE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1261	28	71			1.0
1297	16	83			0.994512
1318	16		83		0.994512
1345			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain