SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6970

Length: 1506 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6970

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoenolpyruvate carboxylase kinase n=5 Tax=Solanum RepID=Q9SDX9_SOLLC	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	phosphoenolpyruvate carboxylase kinase	-	-	74%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	74%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	74%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	74%
Blast2go	Protein kinase-like domain	IPR011009	-	74%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	74%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	74%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP72

Fln msg:

Fln protein: MTDALLQDYQLQEEVIGRGRFGVIRRCFNKQSGQQAACKTITKADLQDSIDRECLNNEIKIMQYLSGHPTVVALHDVYEDDEFVHLVMEMCSGGDLFDRIVGRKNTVPFSEEEAASILQKLMEAISYCHSMGIAHRDIKPDNILFANNSSFLAEIKLADFGQASSFSPGEGLMQGIVGTPYYVAPEVLEGKDYSEKVDVWSAGAILYIMLSGVPPFFGDSPQEIFEAVLFGRLRFPTDQWLSISHSAKDLIRRMLCRDVTKRLSAHQVLEHPWITTHALCNPS*

Protein Length: 285

Fln nts: ATGGGGACACGAAGCAACAGCCGCAAGCCAAGAACGCACAAGCAACAGCAGCAAAA_-_ATGACGGATGCCCTCCTTCAAGACTATCAATTGCAAGAGGAAGTAATCGGCAGAGGAAGATTTGGAGTCATCAGGAGATGTTTCAACAAGCAAAGTGGGCAACAGGCCGCCTGCAAGACCATAACAAAAGCAGATCTGCAGGATTCCATCGACAGAGAATGCCTCAATAACGAAATCAAGATCATGCAGTATCTCTCAGGGCACCCCACTGTGGTTGCGCTTCATGACGTTTATGAGGATGATGAGTTTGTCCATCTGGTAATGGAGATGTGCTCAGGCGGAGACCTGTTCGACAGAATTGTTGGCAGGAAGAATACAGTTCCCTTTTCGGAAGAAGAGGCCGCCAGCATCCTGCAAAAGCTCATGGAAGCCATCAGTTACTGCCATTCCATGGGAATTGCCCATCGAGATATAAAACCTGATAACATTCTCTTTGCAAATAATTCAAGTTTCCTCGCTGAAATCAAGCTTGCAGACTTTGGGCAGGCCTCCTCTTTCTCTCCAGGGGAAGGATTAATGCAAGGAATTGTGGGTACTCCCTATTACGTAGCACCGGAGGTGTTGGAAGGGAAGGATTACAGTGAGAAAGTGGATGTGTGGAGCGCAGGGGCGATCCTCTACATAATGCTTAGTGGCGTTCCCCCTTTCTTCGGAGACTCACCGCAGGAGATATTTGAGGCAGTCCTCTTTGGGCGTCTTCGCTTCCCAACTGATCAGTGGCTGTCGATATCTCACTCTGCCAAGGACTTGATACGCCGGATGCTCTGCAGAGACGTTACCAAGAGACTCAGCGCACACCAAGTGCTAGAGCATCCATGGATCACCACTCATGCCCTGTGCAATCCCAGCTAA___TTTGATTAAGCCAAAGTGTTTTGGGGCATGGACGGTGAAAATGAGATATGCAAACGATGAGATGTTATGTTCTATAACGTTGTAAAGCTTAATAGTTCGTGAGCCTGTGGCAGAGAGCCTGGTTCGATTCTCGCTATCTGACCTATGGGTGTGTTGTCCGCCCGAGTCCTTACGGCGAGCATGCTCATGTTTCTGTGTAAAATATTACCTTGTGGAAGACCTCTTGTCTGGTCTTTTACGTTTTGGTGGAGAACCCATCTCCGTATGTAACAGGTTTTGATTGCAAAACGCGGCATCTGATACAGAGATATTTTGAGCAATGGAGACGGAATTCCACTGGCTTTTGCAAATGGAAGAGTTGCAGGCTTGTACAGTGGAGAAAGAGAGTACCGTTAGAGTAGGTCCGTAGATAATTTGGGAAGTCACAGTTGCATAGTGCGTGATATACTGTCTCTGTAAATATGCCAAATACCTATAAATGAGTGTAGTGCGAGAGCAGTGGGTGATATAAATGAGTATTCTGCGGGAGCAATGGGGAATATACAGTGTAATTTTGTCAATGAATAAAAGGATAGACAGAGATATTCTATAGTGTGTG

Fln Alignment:

sp_v1.1_unigene6970___MTDALLQDYQLQEEXXXXXXXXXXXXCFNKQSGQQAACKTITKADLQDSIDRECLNNEIKIMQYLSGHPTVVALHDVYEDDEFVHLVMEMCSGGDLFDRIVGRKNTVPFSEEEAASILQKLMEAISYCHSMGIAHRDIKPDNILFANNSSFLAEIKLADFGQASSFSPGEGLMQGIVGTPYYVAPEVLEGKDYSEKVDVWSAGAILYIMLSGVPPFFGDSPQEIFEAVLFGRLRFPTDQWLSISHSAKDLIRRMLCRDVTKRLSAHQVLEHPWITTHALCNPS
B8LP72______________MTDALLQDYQLQEEVIGRGRFGVIRRCFNKRSGQQAACKTIRKADLHDSIDRECLNSEIKIMQYVSGHPTVVALHDVYEDDDFVHLVMEMCSGGDLFDRIVSKKSTVPFSEEEAATILQKLMEAISYCHSMGIAHRDIKPDNILFANNSNFLTEIKLADFGQASSFSPGQGLMQGIVGTPYYVAPEVLGGKDYSEKVDVWSAGVIVYIMLSGVAPFLGDTPQEIFEAVLCGRLRFPSDPWLSISNSAKDLIRRMVCRDVTKRLSAHQVLEHPWITTHALRNPS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
108	66	33			0.997452
110	66			33	0.997452
111		33	66		0.997452
114	66			33	0.997452
117		33		66	0.997452
123		33	66		0.997452
126	66		33		0.997452
131		33	66		0.997452
132	66			33	0.997452
133		33	66		0.997452
154	33		66		0.997452
432	83		16		0.994512
898	88	11			0.923564
968	80		20		0.999996
1007	10		90		0.90298
1470	11		88		0.923564
1491	14			85	0.993533
1493	14			85	0.993533
1495	16	16			0.988813
1497		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain