SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6897

Length: 1446 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6897

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AtAUR1; AtAUR1 (ATAURORA1); histone kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase; K08850 aurora kinase, other [EC:2.7.11.1]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	histone phosphorylation	GO:0016572	Biological Process	90%
Blast2go	histone kinase activity (H3-S10 specific)	GO:0035175	Molecular Function	90%
Blast2go	nucleolus	GO:0005730	Cellular Component	90%
Blast2go	spindle	GO:0005819	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	90%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	90%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	90%
Blast2go	Protein kinase-like domain	IPR011009	-	90%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	90%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	90%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRB9

Fln msg:

Fln protein: MAMMSIPECSVQPHYNDQVEGEDKSAVKRWTLDDFDIGKPLGRGKFGNVYLAREKRSKYVVALKVLFKNQLQQSQVEHQLRREIEIQSHLRHPNILRLYGYFYDQNRVYLILEYAPRGELYKELQRCKCFNEKRAATYIASLARTLLYCHEKHVIHRDIKPENLLIGFKGELKIADFGWSIHTFSRRRTMCGTLDYLPPEMVEKKEHDTTVDIWSLGILCYEFLYGIPPFEAKKHSDTYRRIVKIDLKFPPTPAVSDAAKDLIRQILVKDSTQRLPLQKILEHPWIVQNDDPTGVYGQNH*

Protein Length: 302

Fln nts: CACTGGGCAGGTGGCCTACAATCGGACCGTTGGGTTGAGCGTTTTCAAATTTCAAATATTTAACCCTCTCATTTGCGATATCCACACCAATCTCTACCCATAACTGCAGCAGAACCGAGGATTCAACA_-_ATGGCGATGATGTCCATTCCAGAGTGCAGTGTACAGCCACACTATAATGATCAGGTGGAAGGGGAAGACAAGAGTGCTGTGAAACGTTGGACCCTTGATGATTTTGACATTGGGAAGCCTTTAGGAAGAGGAAAATTTGGCAATGTGTATCTTGCCAGAGAGAAGAGGAGCAAGTATGTGGTGGCTCTGAAAGTGCTATTCAAGAATCAGCTCCAACAATCCCAGGTAGAACACCAGCTGAGAAGGGAGATCGAAATACAGAGTCACCTGAGACATCCCAATATACTTCGCTTGTATGGATACTTTTACGATCAGAACCGTGTCTATCTCATTCTTGAATATGCTCCAAGAGGTGAGCTGTATAAAGAGCTACAACGCTGTAAGTGCTTCAATGAAAAACGTGCAGCTACTTACATTGCATCACTAGCAAGGACTCTACTCTACTGCCATGAAAAGCATGTGATACACAGGGACATCAAGCCAGAGAATTTGCTGATTGGCTTTAAGGGTGAACTGAAAATTGCAGATTTTGGATGGTCTATACATACCTTTAGTAGAAGGCGTACCATGTGTGGAACCTTGGATTATTTGCCGCCAGAAATGGTTGAAAAGAAGGAACACGATACTACAGTTGACATTTGGAGCTTGGGAATACTCTGTTATGAGTTTCTCTATGGCATTCCACCATTTGAAGCAAAGAAGCACTCTGATACTTACAGAAGGATTGTTAAAATTGATTTGAAGTTTCCTCCCACCCCAGCAGTTTCTGATGCAGCAAAGGACCTCATTCGTCAAATATTAGTGAAAGATTCTACTCAGCGCCTCCCTTTACAGAAAATTCTCGAACACCCATGGATTGTTCAAAATGATGATCCTACCGGTGTTTATGGACAGAATCATTAA___GACAGTTCTATTTGGTTGTAGGCTCTGTCTTGATTGATTTGATAGTGTTAACTGTCTGTTGACAATTTATCAAATTATTTAATACAATTGAAGCTTCTCGCTTGACTGATGCCATAGATTTTTTGGACTTGCTGCAATCTATCAAAATGTTTGTATTTGTTGCAGTCAGTTAGCCTTGGTCTAGCTGTAGAACAGTAAGGGTTTTATTGTGATTAGCCCGGGTTTGATTTTCAGTGCCCCCCCAAACACGCCTACCTGATGATCCCAGAAGTTCAACTCTCTCTGGCCAACATGCCAACAAGTATTTATGATCATTTTCCAGAGTGCGGTTACTTCTAGATGGCTGCTTACCATTGCCAACATTCGTATCGATACTATCAGCGTTAGAACATAACATTATGTATTCCATAACGGC

Fln Alignment:

sp_v1.1_unigene6897___MAMMSIPECSVQPHYNDQVEGEDKSAVKRWTLDDFDIGKPLGRGKFGNVYLAREKRSKYVVALKVLFKNQLQQSQVEHQLRREIEIQSHLRHPNILRLYGYFYDQNRVYLILEYAPRGELYKELQRCKCFNEKRAATYIASLARTLLYCHEKHVIHRDIKPENLLIGFKGELKIADFGWSIHTFSRRRTMCGTLDYLPPEMVEKKEHDTTVDIWSLGILCYEFLYGIPPFEAKKHSDTYRRIVKIDLKFPPTPAVSDAAKDLIRQILVKDSTQRLPLQKILEHPWIVQNDDPTGVYGQNH
A9NRB9______________MAMMSIPESSVHPENNDQVEGDDKKAGKRWTLEDFDIGKPLGRGKFGNVYLAREKRSKYVVALKVLFKNQLQQSQVEHQLRREIEIQSHLRHPNILRLYGYFYDQNRVYLILEYAPRGELYKELQRCKCFNEKRAATYIASLARALLYCHEKHVIHRDIKPENLLIGFKGELKIADFGWSVHTFSRRRTMCGTLDYLPPEMVENKEHDTAVDIWSLGVLCYEFLYGIPPFEAKKHSDTYRRIIKIDLKFPPTPVVSDAAKDLIRQILVKDSTQRLPLQKILEHPWIVQNDDPTGVYGQNH

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
85		66		33	0.997452
86	66		33		0.997452
87		66	33		0.997452
88		66	33		0.997452
109	50		50		1.0
110			50	50	1.0
112	50		50		1.0
113			50	50	1.0
114	50		50		1.0
116		50	50		1.0
118			50	50	1.0
119	50			50	1.0
124	50	50			1.0
130	50	50			1.0
299	85			14	0.993533
402		80		20	0.995493
408	80		20		0.995493
458			14	85	0.993533
461	85		14		0.993533
499	87		12		0.992554
500	87		12		0.992554
501	87		12		0.992554
523			12	87	0.992554
526	87		12		0.992554
531	87	12			0.992554
532	87	12			0.992554
533	87			12	0.992554
534	87			12	0.992554
535		87	12		0.992554
541			87	12	0.992554
639		18		81	0.999994
676	16		83		0.999991
678	16		83		0.999991
688	81		18		0.999994
726	80		20		0.999996
729		80	20		0.999996
747		80	20		0.999996
759		81		18	0.999994
761		66		33	1.0
763	11	5	77	5	0.999842
766	61			33	1.0
769		33		61	1.0
770	33		66		1.0
771	66	33			1.0
789	88		11		0.999937
790	11		88		0.999937
816	10	89			0.999919
838	84	5	10		0.999846
843		89	10		0.999919
854	89		10		0.999919
867		11		88	0.999937
891		86		13	0.999973
892	86		13		0.999973
898			86	13	0.999973
899		86		13	0.999973
910			89	10	0.999919
911		89		10	0.999919
914		89	10		0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain