SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6876

Length: 1935 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6876

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RL74_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein phosphatase	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2C-like	IPR001932	-	0.0	80%
Blast2go	Protein phosphatase 2C	IPR015655	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7X5

Fln msg:

Fln protein: MISNAENSSMASSKPKGKMEFFTRIKMAAGFTPSSSDTGKGRCKLPNNKVMHGFHLVKGKTRHDMEDYHVAEYRHVEDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPESAIKNAYNRTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKNGNAIQLTVDHEPSIERQNIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTTIDATTEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ*

Protein Length: 302

Fln nts: CAAGGGCCAATATCACCGCGTGAAATTTCATCTATGAATAGAACGTCGTGACCTTGGCTGTCACTCAAGGTTCTTTCTGGTTTTTAAAATCGAAGGTTTGACCAGCTTTGGAACAAGGCTCAATCAATCAAAGAGGGTGGAGGAAAGGAAGCTTCATTGAAAGCGCATGATACAAGGCCAGTCTTTCTCCTCTTAATGTGAAGACAGAGACTTCTGGTGGTATGGGTTGTGACTTTCCAGGAACGAAGATTTGTATGATACTGTGTCCTCCTCATCTTCGTTTTTGTGCCCCATATATACCCTTGCAATGTGAATTTGACGGTGTCAATTGAGATTGGCGGTGCGTCACACATATGTGTT_-_ATGATCTCCAACGCGGAGAATAGCTCCATGGCATCCTCTAAGCCTAAAGGAAAGATGGAGTTCTTCACTAGGATTAAGATGGCAGCTGGCTTCACTCCATCCTCATCTGATACAGGAAAAGGACGTTGCAAGTTACCAAACAATAAAGTAATGCATGGATTTCATTTAGTGAAGGGTAAAACAAGGCATGATATGGAGGACTACCATGTCGCAGAGTATAGGCATGTAGAAGATCATGATTTGGGGCTTTTTGCTATCTTTGACGGACATTTGGGACATGGCGTCCCATGTTACTTGCAATCAAATCTTTTTGACAACATTTTAAATGAGCCGAAGTTCTGGACAGACCCAGAAAGTGCCATCAAGAATGCATACAACCGGACTGATGGGAAAATCTTAGCAAAGGCAGCTGATTTAGGGCCCGGTGGCTCCACAGCAGTCACTGCTATTTTAGTTGATGGGAAAAAACTCTTTGTAGCAAATATAGGGGATTCCAGGGCTGTTATATGTAAAAATGGCAATGCTATTCAGCTGACTGTTGATCATGAGCCAAGTATTGAACGCCAAAACATCGAGAAGAAGGGTGGATTTGTGACACTCCTGCCAGGAGATGTACCTCGAGTTAATGGTCAGCTTGCTGTAGCTCGTGCGTTTGGTGACAGGAGCCTGAAGCAACATTTAAGTTCAGAACCAGATGTGAGAGACACAACCATAGATGCAACCACAGAATTTCTCATTTTGGCTAGTGATGGATTGTGGAAGGTCATGAAAAATCAAGAGGCTGTTGATTTGGTTAGAAAAATCAAGGACCCTCAGGTGGCAGCCAAGTGTCTGACTGAAAATGCAGTTGCAAGAAAGAGCAAAGATGATATTTCATGCATTGTTGTGCGCTTCCAGCAGTAA___AAATGGATTTACATTTGTACCAGTGATTGGATGCAGAAATTTTCCAGAAACAGTTCGTAGATTGGTCGAACCTTCCCCTCAGTATTTTTTGGTTGAATTCCAAGCAGCATCCAATATTATAAGTATTTTCACCTTCTGCTGCTGCTTTTGCTGTACCTAGTACGAAGATTCCCCGCACTTTATAAACTCAAACGGGATGGCTAGTTTCACTTTCAAAGCCATTGAGAATTTGTTTGCTTAAATATAATTATCTTGTCATGCTTTACAGAAACATCACTGAGACATGAAAACTCAGTGAATGACCAATGGACTCTTTTGTGTTGGTGATCGTGCTACGATCAGCAATATCAAGAACTCTATTAAACCAAAGTGCCCCCTCCAGGCTCTGTACATGCTTCATGGCTGAAGCCTATATAAATATCTTAGAAATAATGGACTTCAAACCATTGCATTGGTTTCAAAATACCATGTTACTGCAGTTGTTGAAACAGTAATATTTATTTGATAGAAATAATGGACTCCTAACCATTGCATTGGTTTCAAAATGCCATGTTATTACAGTGGTTGAAACAGTAATAATTATTTGTTATTATCTCCTTCGTCATTTGAAACTTGTTTCAGAGCATGGCAGATGCTCACTCAGTAATGCTCGTTTGATATGGTGTTAATTAG

Fln Alignment:

sp_v1.1_unigene6876___MISNAENSSMASSKPKGKMEFFTRIKMAAGFTPSSSDTGKGRCKLPNNKVMHGFHLVKGKTRHDMEDYHVAEYRHVEDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPESAIKNAYNRTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKNGNAIQLTVDHEPSIERQNIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTTIDATTEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ
D5A7X5______________MISNGENSSMASSKAKGKKEFFTRIKMAAGFTPSSSDTGKGRCKLPNNKVIHGFHLVKGKTRHDMEDYHVAEYRHLKDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPVGAIKNAYNWTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKSGTAIQLTVDHEPSIERQTIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTSIDATIEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
177	11		88		0.923564
178		88		11	0.923564
179		88	11		0.923564
180	88		11		0.923564
182			11	88	0.923564
296		80		20	0.995493
537	83		16		0.994512
705		12		87	0.992554
744		87		12	0.992554
756	87		12		0.992554
829	88	11			0.923564
835		11		88	0.923564
1390	92	7			0.999602
1636	88			11	1.0
1643	5	94			0.998744
1825		25		75	1.0
1859	11			88	0.923564
1872	85		14		0.993533
1907		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain