SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6874

Length: 1590 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6874 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TT_ORF1 multi-domain protein	-	-	5.0e-06	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	unknown [Picea sitchensis]	-	-	6.49213e-19	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQA2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 218 aas, putative chimeric sequence, your sequence is shorter than subject: 117 - 335

Fln protein: MAAVGGLAIGMCIVFGGFVLLLLAELCYVFYWKRRRSWRRISGIPATEIFSAAADRSANFSFSREVGLVGAGDHSSDPQYLAKLLPIGGSSTCNSGLYMQGVLGGPRLLFTIDNLL*

Protein Length: 118

Fln nts: CAGGATGGGGCCTGAGTAATTCGTTCCTGCTGCACAGATCAGGTATGAATTTTGTATTCTGAAGATTGAGATCTGTAATATGCTGTTGCCATTCTGGTCATGGCAGCTCTCTGTAATTGCAGGCAGTAGAGCAGCCATGGTTGTACTATATTTAGTACTACATCTGGCGTGCTCTGAGTTTTTCAACAGCACTGTAACATTATCATGGTCGGGTCAATAAATGTGCTGATTTCCAAGAAGGTGAAGAATTTGTTAAGTAAACCCTCTAAACCCTCTGAGGGTTAGGTTCGCAGGAAGC_-_ATGGCAGCGGTAGGAGGATTAGCCATAGGAATGTGTATTGTGTTTGGCGGATTTGTGTTGCTTTTACTGGCTGAACTCTGCTATGTTTTCTACTGGAAGAGGCGGAGGTCTTGGAGGAGGATCAGTGGCATCCCAGCTACTGAAATCTTTTCTGCTGCTGCAGACAGATCAGCAAATTTCAGCTTTTCCCGAGAAGTTGGATTGGTGGGTGCTGGAGATCATTCATCGGATCCTCAGTATTTAGCAAAGCTGCTTCCAATTGGCGGCAGCAGCACCTGCAACAGTGGTCTGTACATGCAGGGCGTGCTGGGTGGGCCGAGGCTGCTGTTTACAATCGATAATCTACTCTGA___TTCGCCATTGCAAAGAAGTGTCATCGGCTTTCGGTCATTTTACTTCTGAGTATTCTTCTTCTTCCCCTGCAAACCCGCGGTATTCATTGTACCCAGGCAGTTACCCTTCCTCTTCTTCTTCTTCCCCGCCTCGCAGATCTGTTTCTTCATCGTTTCCTTCTTCGTGCTCGGCCTCGCCATGGCAAAATTGCGATCTGGCAGATTCACATTCAAGAAATGAATATGAGGACTTGCGCAGTATGTCAAATGATTCAGAAGGGCCCTACGTATTCTACGACGCCGAGGCTGATAGATTTTCATCCAGGAGGAGTACAGAATTTGGCACCCCTGTTTCGTCCCCTTCTCATCgTCTGtGAcaTAATgGCtGTCACTCATGTCTTCCTCTGGTAGCCCGCCCTTAACTCCACCGCTTACTCCCATCAGAGCTCCCTTGGCCGCTTACTCAATTCCACTCTTTACCCGCTCATTCTCCTTCTCTGCAATAAATCCCAGTAACTCATAATTCCCAATTATTATCAGTCGTCTCCTCCATTGTCCCAAATGGGTTTCAGGACGATCAGTTTCAGCAGATGGATCCTTCCTTTGAATAAACACAAGGCAGAGCAGCGCTATATATGCATCCCAGCTGAGAATTCCACCACAGTTCCTGTGGCAAGACAGTGGTTGTAGCCATGGCATTCTGCATTAAAAACCCTTTGAACAGGAGATTCTGATGAAAAGAGATGCAGACTTCATTTCAAAGTTAATTTCCCAAAAATAGTATTTCCTGGCATGACCAGTCCAATGGTCTCAGGTGTACTGACTCAGACAGCCATTATTACAGGGCAAAGCTTCTACTGGTGGCAAATCAGAAAAGACAACCTTGCTCTTCCTGGCGGTGGATAAGAGGGACTCAAAAGGCTTCATTTTCAGTGAATTCTCAGTGAATGATGTCTGAATTC

Fln Alignment:

sp_v1.1_unigene6874___MAAVGGLAIGMCIVFGGFVLLLLAELCYVFYWKRRRSW--RRISGIPATEIFSAAADRSANFSFSREVGLVGA-GDHS----SDPQYLAKLLPIGGSST-CNSGLYMQGVLGGPRLLFTI
B8LQA2______________MAELGGLAIGLSVVFGVFVLVLLAELYYLFYWKCRSPWNMRRINSI-ATEF------TEGGFNFSREDGLLGSLGSHSIREAEDPESLAKLFPISSDLIGSNNGLYMQDELGRSRVLFTI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1198		66		33	0.997452
1243	33	66			0.997452
1310	75		25		0.996473
1382		33		66	0.997452
1383		33	66		0.997452
1386		66		33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
818	831	GAA GAA GAA GAA GA	14
878	889	GAA GAA GAA GAA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain