SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6872

Length: 1897 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6872

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	5'-AMP-activated protein kinase beta-1 subunit-related	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7T9

Fln msg: your sequence is longer than subject: 322 - 142

Fln protein: MRMESICFMTGNGRSSLPKVGWWSTSQPPRQEGNGSHKNLNPMSICKSATRVGRCKWPVIVCIRRYPKEQMAEFLAMDYNTVARRSLQRRFAITVGSEEKAMELSEEYTDNSNGASSDFSRSYFGQPVDSTELESMRTDNVRAKLIRKLSEANQHNRHLKRQLHDKEKSLNKYKNELAVMELELQALVTLAEEVARYGIEDGSRKVNGRYIHSHLALRLEELHKKVLEQIKGVDAIQFREVPLVWYGMAEDVKVMGSFDGWIHGEQMSPESTASFTKFSTILKLLPGRYEIKFLVDGEWQLSPELQILGEGPLANNLLVVE*

Protein Length: 323

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATACCTTTAAACGGATGAATGATATTCGTATAACACGATTCTTATGGTAATGGTCGTCGGCGAATGCAGTACACGGGCATACACGTACACGAGGAAGAATAACACGTGGAAACCCATCACATCTGCCCAATAATTTGATTTGATAGACAGTTAAACTGCTACGGCGTAGGTGTGTGTACCCCAAAGCTCACCCAAGTGCAAGAGCTGGGCAAGCCTTATGTATTGCCAAGAGCTACTGCTACATCTTCCGCGTGCAGAGAAGTATCTCTTCCCTCACTAAATCCAAATTAGGGGCAAATCTTCTGTCTTAGAGGTTCCAGTCGCAGCCTCCCTCCTGTTACTTCTCTCGCATTTTAGTTATGCAGACAGGGTT_-_ATGAGGATGGAATCTATCTGTTTTATGACGGGAAATGGAAGATCTAGCCTTCCTAAAGTTGGTTGGTGGTCAACTTCACAACCTCCACGACAAGAAGGGAATGGTAGTCACAAAAACTTAAACCCCATGTCCATTTGTAAGTCAGCCACGAGAGTGGGCAGGTGTAAGTGGCCAGTTATTGTATGCATAAGAAGGTATCCAAAGGAGCAAATGGCTGAATTTTTGGCTATGGATTACAATACGGTTGCAAGGAGATCTCTGCAAAGAAGATTTGCTATCACAGTTGGTTCCGAAGAGAAAGCTATGGAGTTATCAGAAGAGTACACTGATAATTCTAATGGAGCTTCATCAGACTTCTCTAGAAGTTATTTTGGACAGCCAGTTGATAGTACTGAGTTGGAATCCATGCGAACAGATAATGTTAGAGCAAAGCTTATTAGGAAGCTTAGTGAAGCTAATCAACACAATCGACACCTGAAACGCCAGCTTCATGATAAGGAAAAGTCTTTGAACAAATACAAGAATGAACTTGCGGTTATGGAATTGGAGCTCCAGGCTCTCGTGACCCTAGCAGAAGAAGTGGCAAGATATGGGATCGAGGATGGATCAAGGAAAGTCAATGGAAGATATATACATTCTCACCTTGCATTAAGGCTAGAAGAACTTCATAAAAAAGTACTTGAGCAGATAAAGGGTGTGGATGCAATTCAGTTTCGTGAAGTTCCTCTTGTGTGGTATGGTATGGCCGAGGATGTCAAAGTTATGGGCTCATTTGATGGTTGGATCCATGGGGAACAGATGTCTCCTGAGAGCACTGCTAGCTTTACAAAGTTTTCGACAATATTAAAACTTCTCCCAGGCCGGTATGAAATCAAGTTTCTAGTTGATGGAGAATGGCAGTTATCTCCAGAATTGCAGATTTTGGGGGAAGGCCCACTGGCAAATAATCTATTGGTTGTCGAATGA___TTGGACAATGAAATGATCAATGTTGATTTTGTTTAGCTTGCGTTTCAGACTATATCATATCTGTTTAATGGTTCTATCTCTATAGAGTTTATTAGGCTAAACCAAGACCTCTATTTGCATATTTGGAAAAAATTGCAGTCCATAGTATGTAAACTTATGTTGAGTATGTTTGCTTTTTTCGACCTGCTGAAGGTGAGAAGAGAACACGTAAAGGGCAGCACACAACCAGGGAAGTAGTTGATGGAAAAGGCATAACCGCATTTCAGTTTTGTTGAAATACATAGGAATTCTTCTTCAATCATTTTTCTGAATTCTTATTGTTGGCCAATTTGAAAATAGGTCCCAATGATTCAACTGTGGCATTGGTATTTACTTAACCAATCCAATGTGTCCCGAGGTTTTGTCTCGTCATTTAAAATACTTGTAGAATAGCAATCTGATTGGAACCATATTGAAACTAGATTGATTCCTGTGTCCAGTCTCTTCCTCTTCGAAGCAACCCATATTACATGGATCATTTGGTTACTCGAAA

Fln Alignment:

sp_v1.1_unigene6872___MELELQALVTLAEEVARYGIEDGSRKVNGRYIHSHLALRLEELHKKVLEQIKGVDAIQFREVPLVWYGMAEDVKVMGSFDGWIHGEQMSPESTASFTKFSTILKLLPGRYEIKFLVDGEWQLSPELQILGEGPLANNLLVVE
D5A7T9______________MELELQALITLAEEVARYGIKDGSRKINGRYIHSHLALRLEEFHEKLLEQIKGVDGMQFREVALVWYGMAEDVKVMGSFDGWIHGEQMSPESTASVTKFSTTIKLHPGRYEIKFLVDGEWQLSPELQILGEGPLANNLLVVE

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
124	60		40		1.0
127	60	40			1.0
489	83		16		0.994512
520	75	25			0.996473
579		14		85	0.993533
582	85		14		0.993533
586	85	14			0.993533
588	85			14	0.993533
589	85		14		0.993533
591	85	14			0.993533
592	85			14	0.993533
594			85	14	0.993533
595		14		85	0.993533
599	14	85			0.993533
644	10			90	0.90298
648	90		10		0.90298
649	90		10		0.90298
945			87	12	0.992554
1075			85	14	0.993533
1089	88	11			0.923564
1090	88		11		0.923564
1091	88			11	0.923564
1093	11		88		0.923564
1094		11	88		0.923564
1095		11		88	0.923564
1096			88	11	0.923564
1100	88	11			0.923564
1103		88		11	0.923564
1104	88	11			0.923564
1106		11		88	0.923564
1597	81	18			0.999994
1649	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain