SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6862

Length: 2245 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene6862
ACAGCAAAAATANAGAGAGGGGAAAGGAAAGGAATGGAAGAGATGGAGAATGCCAGATGGAGNGATCTGGACAAGCTGCTTACCAGGCCGGGCAATCTCGTTTCACCAAATTTTGAGCCACGAAAAGAGTTGAGAGAGGATCTACAAGAATATGTAAAGGTCTTGGTTGTAGGAGCTGGGGGTTTAGGCTGTGAATTACTGAAAGATCTGGCTTTGTCAGGTTTTAAAAATATTGAAGTCATAGATATGGATACCATTGAAGTTTCCAACCTCAACAGGCAGTTTCTCTTCAGGATGCAAGATGTAGGGCAACCAAAAGCTGTCATAGCTGCAAGACGAGTCATGGAACGAGTTAGTGGGGTGAACATAGTACCTCATTTCTGTCGGATAGAGGACAAAGACTTTGAGTTCTACAGGGTTTTTGACATCATTGTAATTGGTCTTGATTCACTTGAGGCTCGCAGCTATATCAATGCGGTGGTTTGTAGCTTCCTTGAGTATGACTCTGATGACAAGCCACGGGAAGAAACAATAAAACCTATGGTTGATGGGGGAACTCAAGGATTCGGTGGCCATGCCAGAGTGATCTTACCCGGAATCACAGCATGCGTTGAGTGTAGTATGTGGGTTTTTCCACCACAAGTTAAATTTCCTCTCTGTACTCTTGCTGAGACGCCACGAACAGCTGCACATTGCATTGAGTATGCCCATCTAATTCAGTGGGATGAGCAACATCGAGGAAAAACTTTTGATGCTGACAACCCAGAGCACATGCAGTGGGTTTATTCACAGGCACTCAATAGAGCAGAGTTATATGGTATAAGTGGAGTCACGTACTCGTTAACTCAGGGTGTTGTTAAAAACATTGTTCCAGCCATCGCTTCAACAAATGCCATTTTATCATCTGCATGTGCACTGGAGGCACTTAAGATTGTAACCGGATTCAGCAAGATTTTGTCAAATTTTTTAACGTATCATGGCTCTGCAGGTGTTCACACAAGTGTACCTGAGTTTGTGAAGGACAATGAATGTCTGGTCTGCGGTCCTGGAGTTCTCATTGAGTTGGACACCACTGTAACTTTGCAAAAGTTTATGGACCTCCTTGCAGAACATCCAGTGCTTAAGATGTCAAGAACAAGTGTGATGTATCAAGGAAATAATCTATATATGCAAGCACCACCTGTATTGGAGGAGATGACACGATCAAATTTACAGATTCCGCTGTTTGAGCTCATGGGCAAAATTCCTAAAGATATTGTACATGTGAGTGGTACTACAAATATTGATGATAAGAAGTCCACCGCATCTAGAAAAGTGCGGGTATCTTTTAAGGGAATTGCAGATTGCGTCACAGATATGGACACTGCATGTGGAGGCTAAGTAATATCCCGGGGAATTATTCTTCTCCTTAATTAATAGTTAAGCTCTTTCTATGGGAGTTGTTTTGAAGCCAGTTTATCTGCAGCCAATTATTTGGATTGCATAGTTTGTCAGAATTTGCAGGTATGCTAAAGAGAAGCCTGCACGTCTAAGCATTTAGATGTTTTGCCCCAGTTTTCTCAGATAAAAAAAGCTTTATAATTTTTTTGTATGACCTCCACCACAGACAATATGATGTGCTTCAATCGTAATTGTGAACTGGCATCTTGAAACATTTGAATAGTCTGATACAAAGGGTTAATGCTTAAAAATGATGGTTAGCCTAGTTCTCCTGGATAACACTTGGCCGGGATATATCATGGTGGAGTTGTTTTCTGAGATAAAATCAGTTACTATTAATCACGAGGTTCAGACATCAAACAAATTGTTCTATTGCAGCAATATAGATTTGTTTGAATTTTCTCTGAAATGTTCATATCTTGGAATGGAGATGAGTGTACTGAGTTATTGGCTTATTATTCAATGGATAATTCTATGCAAGGTCACTATTAACTCTCAAAACTAGCATGGTTGACTTACCAGCAGTGCTGCAGTTGGAATTCATTCCACCGTCAATGTTGCATACGTTGGAGTATTTATAGAATAGGATTTTGTTTTTCAAGATGTACGTTTATGTAAGAGGACTGTTTCATTTTGACTTACTGCTGGTATGAGACCTGTTGTTTTTGGTTTGGTAAACTTGTTGGACAGGTTGGCCATGAGGCATGCTCGTTTGAGTTATTTGAGGTGCTCCTCCTTTGTTTTGCTTTGTGGTTATGACGTTTGAAACAGCTAGAGCAGTAATAACTGAAATTATGAAGTTACA

Ace file of the UniGene sp_v1.1_unigene6862 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-activating enzyme E1c, putative; K10686 ubiquitin-activating enzyme E1 C [EC:6.3.2.19]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	NEDD8 activating enzyme activity	GO:0019781	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-activating enzyme repeat	IPR000127	-	80%
Blast2go	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	80%
Blast2go	Molybdenum cofactor biosynthesis, MoeB	IPR009036	-	80%
Blast2go	E2 binding	IPR014929	-	80%
Blast2go	NAD(P)-binding domain	IPR016040	-	80%
Blast2go	Ubiquitin-activating enzyme, E1, active site	IPR018074	-	80%
Blast2go	Ubiquitin-activating enzyme	IPR019572	-	80%
Blast2go	Ubiquitin activating enzyme, alpha domain	IPR023318	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQD0

Fln msg:

Fln protein: MEEMENARWSDLDKLLTRPGNLVSPNFEPRKELREDLQEYVKVLVVGAGGLGCELLKDLALSGFKNIEVIDMDTIEVSNLNRQFLFRMQDVGQPKAVIAARRVMERVSGVNIVPHFCRIEDKDFEFYRVFDIIVIGLDSLEARSYINAVVCSFLEYDSDDKPREETIKPMVDGGTQGFGGHARVILPGITACVECSMWVFPPQVKFPLCTLAETPRTAAHCIEYAHLIQWDEQHRGKTFDADNPEHMQWVYSQALNRAELYGISGVTYSLTQGVVKNIVPAIASTNAILSSACALEALKIVTGFSKILSNFLTYHGSAGVHTSVPEFVKDNECLVCGPGVLIELDTTVTLQKFMDLLAEHPVLKMSRTSVMYQGNNLYMQAPPVLEEMTRSNLQIPLFELMGKIPKDIVHVSGTTNIDDKKSTASRKVRVSFKGIADCVTDMDTACGG*

Protein Length: 450

Fln nts: ACAGCAAAAATAgAGAGAGGGGAAAGGAAAGGA_-_ATGGAAGAGATGGAGAATGCCAGATGGAGtGATCTGGACAAGCTGCTTACCAGGCCGGGCAATCTCGTTTCACCAAATTTTGAGCCACGAAAAGAGTTGAGAGAGGATCTACAAGAATATGTAAAGGTCTTGGTTGTAGGAGCTGGGGGTTTAGGCTGTGAATTACTGAAAGATCTGGCTTTGTCAGGTTTTAAAAATATTGAAGTCATAGATATGGATACCATTGAAGTTTCCAACCTCAACAGGCAGTTTCTCTTCAGGATGCAAGATGTAGGGCAACCAAAAGCTGTCATAGCTGCAAGACGAGTCATGGAACGAGTTAGTGGGGTGAACATAGTACCTCATTTCTGTCGGATAGAGGACAAAGACTTTGAGTTCTACAGGGTTTTTGACATCATTGTAATTGGTCTTGATTCACTTGAGGCTCGCAGCTATATCAATGCGGTGGTTTGTAGCTTCCTTGAGTATGACTCTGATGACAAGCCACGGGAAGAAACAATAAAACCTATGGTTGATGGGGGAACTCAAGGATTCGGTGGCCATGCCAGAGTGATCTTACCCGGAATCACAGCATGCGTTGAGTGTAGTATGTGGGTTTTTCCACCACAAGTTAAATTTCCTCTCTGTACTCTTGCTGAGACGCCACGAACAGCTGCACATTGCATTGAGTATGCCCATCTAATTCAGTGGGATGAGCAACATCGAGGAAAAACTTTTGATGCTGACAACCCAGAGCACATGCAGTGGGTTTATTCACAGGCACTCAATAGAGCAGAGTTATATGGTATAAGTGGAGTCACGTACTCGTTAACTCAGGGTGTTGTTAAAAACATTGTTCCAGCCATCGCTTCAACAAATGCCATTTTATCATCTGCATGTGCACTGGAGGCACTTAAGATTGTAACCGGATTCAGCAAGATTTTGTCAAATTTTTTAACGTATCATGGCTCTGCAGGTGTTCACACAAGTGTACCTGAGTTTGTGAAGGACAATGAATGTCTGGTCTGCGGTCCTGGAGTTCTCATTGAGTTGGACACCACTGTAACTTTGCAAAAGTTTATGGACCTCCTTGCAGAACATCCAGTGCTTAAGATGTCAAGAACAAGTGTGATGTATCAAGGAAATAATCTATATATGCAAGCACCACCTGTATTGGAGGAGATGACACGATCAAATTTACAGATTCCGCTGTTTGAGCTCATGGGCAAAATTCCTAAAGATATTGTACATGTGAGTGGTACTACAAATATTGATGATAAGAAGTCCACCGCATCTAGAAAAGTGCGGGTATCTTTTAAGGGAATTGCAGATTGCGTCACAGATATGGACACTGCATGTGGAGGCTAA___GTAATATCCCGGGGAATTATTCTTCTCCTTAATTAATAGTTAAGCTCTTTCTATGGGAGTTGTTTTGAAGCCAGTTTATCTGCAGCCAATTATTTGGATTGCATAGTTTGTCAGAATTTGCAGGTATGCTAAAGAGAAGCCTGCACGTCTAAGCATTTAGATGTTTTGCCCCAGTTTTCTCAGATAAAAAAAGCTTTATAATTTTTTTGTATGACCTCCACCACAGACAATATGATGTGCTTCAATCGTAATTGTGAACTGGCATCTTGAAACATTTGAATAGTCTGATACAAAGGGTTAATGCTTAAAAATGATGGTTAGCCTAGTTCTCCTGGATAACACTTGGCCGGGATATATCATGGTGGAGTTGTTTTCTGAGATAAAATCAGTTACTATTAATCACGAGGTTCAGACATCAAACAAATTGTTCTATTGCAGCAATATAGATTTGTTTGAATTTTCTCTGAAATGTTCATATCTTGGAATGGAGATGAGTGTACTGAGTTATTGGCTTATTATTCAATGGATAATTCTATGCAAGGTCACTATTAACTCTCAAAACTAGCATGGTTGACTTACCAGCAGTGCTGCAGTTGGAATTCATTCCACCGTCAATGTTGCATACGTTGGAGTATTTATAGAATAGGATTTTGTTTTTCAAGATGTACGTTTATGTAAGAGGACTGTTTCATTTTGACTTACTGCTGGTATGAGACCTGTTGTTTTTGGTTTGGTAAACTTGTTGGACAGGTTGGCCATGAGGCATGCTCGTTTGAGTTATTTGAGGTGCTCCTCCTTTGTTTTGCTTTGTGGTTATGACGTTTGAAACAGCTAGAGCAGTAATAACTGAAATTATGAAGTTACA

Fln Alignment:

sp_v1.1_unigene6862___NARWSDLDKLLTRPGNLVSPNFEPRKELREDLQEYXXXXXXXXXXXXXXXLKDLALSGFKNIEVIDMDTIEVSNLNRQFLFRMQDVGQPKAVIAARRVMERVSGVNIVPHFCRIEDKDFEFYRVFDIIVIGLDSLEARSYINAVVCSFLEYDSDDKPREETIKPMVDGGTQGFGGHARVILPGITACVECSMWVFPPQVKFPLCTLAETPRTAAHCIEYAHLIQWDEQHRGKTFDADNPEHMQWVYSQALNRAELYGISGVTYSLTQGVVKNIVPAIASTNAILSSACALEALKIVTGFSKILSNFLTYHGSAGVHTSVPEFVKDNECLVCGPGVLIELDTTVTLQKFMDLLAEHPVLKMSRTSVMYQGNNLYMQAPPVLEEMTRSNLQIPLFELMGKIPKDIVHVSGTTNIDDKKSTASRKVRVSFKGIADCVTDMDTACGG
B8LQD0______________NARWRDLDKLLTRPGNLVSPNFEPRKELREDLQEYVKVLVVGAGGLGCELLKDLALSGFKKLEVIDMDTIEVSNLNRQFLFRMQDVGQPKAVVAARRVMERVSGVNIVPHFCRIEDKDSEFYRVFDIIALGLDSIEARSYINAVVCSFLEYDSDDKPLEETIKPMVDGGTEGFKGHARVILPGMTACFECTVWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIQWDEEHRGKTFDADNSEHMQWVYSQALKRAELYGISGVTYSFTQGVVKNIVPAIAATNAIISSTCALEALKIVTGFSKILSNYSTYNSIAGLHTSVSEFVKENDCLVCGPGVLIELDTTVTLQKFMDLLAEHPMLKMSRTSVMYQGNNLYMQAPPVLEEMTRSNLQIPLFELMGKVPKDVVHVNGTTNIDDKKSSASRKVRVTFKGIADEVTDMDTACGG

SNPs (tot: 111)

Position	A %	C %	G %	T %	Probability
295	80		20		0.995493
374		83	16		0.994512
376			16	83	0.994512
377		83		16	0.994512
378			16	83	0.994512
379	16	83			0.994512
383			16	83	0.994512
389	83		16		0.994512
392		16		83	0.994512
397	83		16		0.994512
416		80		20	0.995493
447	10			90	0.90298
448			10	90	0.90298
452		10		90	0.90298
453	10		90		0.90298
454			10	90	0.90298
457		10	90		0.90298
460		90	10		0.90298
461		90	10		0.90298
464	10		90		0.90298
465		10		90	0.90298
468		10		90	0.90298
469			10	90	0.90298
575		8		75	0.99999
578	90		10		0.90298
579	10			90	0.90298
580		90	10		0.90298
581	90			10	0.90298
626	90		10		0.90298
627			90	10	0.90298
628		90	10		0.90298
632		10		90	0.90298
638			10	90	0.90298
642		10		90	0.90298
644	10			90	0.90298
645		10	90		0.90298
781	23		76		1.0
782		84	15		0.999986
788	84	15			0.999986
789		13		86	0.999973
792	86		13		0.999973
793		86	13		0.999973
795		13	86		0.999973
796	13		86		0.999973
798			13	86	0.999973
799	13			86	0.999973
801	80		13		0.999961
823	14	85			0.999981
824			14	85	0.999981
826	86		13		0.999973
829	13			86	0.999973
830	86		13		0.999973
831		13		86	0.999973
832		13		86	0.999973
835			13	86	0.999973
837	86	13			0.999973
839		13	86		0.999973
855		76	23		1.0
902	90	10			0.999898
926		83		16	1.0
927		83	16		1.0
928	16	83			1.0
930		83	16		1.0
934	16			83	1.0
935			16	83	1.0
936		11		88	0.999937
938	16			83	1.0
941	83		16		1.0
943	16		83		1.0
946	16		83		1.0
947		16		83	1.0
1104		85	14		1.0
1151	15	85			1.0
1154			15	85	1.0
1155	85	15			1.0
1156	85	15			1.0
1158	15	85			1.0
1159			15	85	1.0
1160			15	85	1.0
1162		15		85	1.0
1163	15		85		1.0
1165	85		15		1.0
1167	85	15			1.0
1287	15			84	0.999986
1289	84			15	0.999986
1290		84	15		0.999986
1292	84	15			0.999986
1294	84		15		0.999986
1295		14		85	0.999981
1297	14			85	0.999981
1298	15			84	0.999986
1300		84	15		0.999986
1302		15	84		0.999986
1304	84	15			0.999986
1305			15	84	0.999986
1306	15	84			0.999986
1311			10	90	0.90298
1327	10			90	0.90298
1329		90	10		0.90298
1627		78	21		1.0
1632		78	21		1.0
1633		21		78	1.0
1637		78	21		1.0
1641		21		78	1.0
1643	21	78			1.0
1644		21		78	1.0
1667		10		90	0.90298
1982	75			8	0.99999
2088	16	83			0.994512
2108	16	83			0.994512
2185		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain