SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6850

Length: 1080 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6850 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BTB/POZ domain-containing protein	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	btb poz domain-containing protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	81%
Blast2go	Cul3-RING ubiquitin ligase complex	GO:0031463	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	BTB/POZ-like	IPR000210	-	81%
Blast2go	BTB/POZ fold	IPR011333	-	81%
Blast2go	BTB/POZ	IPR013069	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2K0

Fln msg:

Fln protein: MTESNVETTARLAQWRIESLGSCSYRRSDAFRVGIWNWHFSIEKNRYLYIRLFPEPGRISKEQPPIATFVLRIFNVGVSRRPWTSPVYDKLLRSSEDFVWPIDSSFHGRFIIDVEFLDLKIATMNGGEACSIWPNEGAMQCQATKGALKCLSRMLDDGLHTDVTINTANGSVRAHRAVLAARSPVFESMFLHDLKEKESSIINIEDISVEACMALLSYIYGGIKHEDFWNHRIALLRAADKYDIGDLKESCEESLLEDIDSKNVLERLQEAWLYQLSRLKKSCLMYLFDFGKIYDVRDDLNMFFQHADRELMIEMFQEVLNVWRVG*

Protein Length: 328

Fln nts: CTGAAGAAGAGCAACAAAC_-_ATGACCGAGTCAAACGTAGAGACAACGGCAAGGCTTGCACAATGGAGGATAGAAAGCTTGGGCTCCTGCTCTTACCGGAGGTCTGATGCCTTCAGAGTCGGAATCTGGAACTGGCACTTTTCAATTGAAAAGAACAGGTATCTATATATTCGTCTTTTCCCTGAGCCTGGTCGCATTTCTAAAGAACAACCACCAATTGCAACATTTGTGCTTCGCATATTCAATGTAGGAGTAAGTCGACGACCTTGGACATCACCAGTCTATGATAAGTTGCTCCGCAGCAGTGAGGATTTTGTGTGGCCTATAGATTCTAGCTTTCATGGACGTTTTATAATTGATGTGGAGTTCCTGGACCTGAAAATTGCTACAATGAATGGTGGAGAAGCTTGTTCAATATGGCCCAATGAAGGAGCAATGCAGTGTCAAGCAACTAAGGGTGCATTAAAATGCCTTTCTCGTATGTTGGATGATGGTCTTCACACGGATGTAACTATTAATACTGCTAATGGTAGTGTTAGAGCACATCGGGCTGTTTTAGCAGCACGATCCCCTGTTTTTGAGAGTATGTTCTTGCATGATCTCAAAGAGAAAGAATCATCGATAATTAATATTGAAGACATATCTGTGGAAGCTTGCATGGCTCTTCTAAGCTACATCTATGGAGGTATCAAACATGAGGACTTTTGGAACCATAGAATAGCTTTATTGAGGGCTGCTGATAAATATGACATTGGGGACTTGAAAGAATCCTGTGAAGAAAGCCTTTTGGAGGATATAGATTCTAAAAATGTTCTCGAGAGGCTGCAAGAGGCCTGGCTCTACCAGCTAAGTCGACTGAAGAAATCATGCTTGATGTATTTGTTTGACTTTGGAAAGATCTATGATGTGAGGGATGATTTGAACATGTTTTTCCAACATGCTGACAGGGAGTTGATGATTGAGATGTTTCAAGAAGTGCTGAATGTTTGGAGGGTAGGATAA___CTTCATGAACAGATATTAGATTGACATGAGATGGCTCAAGCTGATTCAAGTATTTAATTTATATTCTGCTTTTATTCCAA

Fln Alignment:

sp_v1.1_unigene6850___MTESNVETTARLAQWRIESLGSCSYRRSDAFRVGIWNWHFSIEKNRYLYIRLFPEPGRISKEQPPIATFVLRIFNVGVSRRPWTSPVYDKLLRSSEDFVWPIDSSFHGRFIIDVEFLDLKIATMNGGEACSIWPNEGAMQCQATKGALKCLSRMLDDGLHTDVTINTANGSVRAHRAVLAARSPVFESMFLHDLKEKESSIINIEDISVEACMALLSYIYGGIKHEDFWNHRIALLRAADKYDIGDLKESCEESLLEDIDSKNVLERLQEAWLYQLSRLKKSCLMYLFDFGKIYDVRDDLNMFFQHADRELMIEMFQEVLNVWRVG
A9P2K0______________MTESKVETTARLAQWKIESLGSCSYRRSDPFRVGIWNWHLSIEKNRYLYIRLFPEPGRISKEQPPIATFVLRIFNVGVSRRPWTSPVYDKLLRSSEDFVWPIDSSFHGRFIIDVEFLDLKIATMNGGEACSIWPNEGAMQCQATKGALKCLSRMLDDGLHTDVTINTANGSVRAHRAVLAARSSVFESMFLHDLKEKESSIINIEDISVEACMALLSYIYGGIKHEDFWNHRIALLRAADKYDIGDLKESCEESLLEDIDSKNVLERLQEAWLYQLSRLKKSCLMYLFDFGKIYDVRDDLNMFFQHADRELMIEMIQEVLNVWRVG

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
512			83	16	0.999991
514	16		83		0.999991
521	16		83		0.999991
523	16			83	0.999991
526		16		83	0.999991
529	83		16		0.999991
530	83			16	0.999991
533		16	83		0.999991
534		83	16		0.999991
535	16	83			0.999991
590		85		14	0.993533
591		85	14		0.993533
596			14	85	0.993533
601		85	14		0.993533
602	85		14		0.993533
639		20	80		0.995493
640	80	20			0.995493
653	14	85			0.993533
656			14	85	0.993533
658	85		14		0.993533
659	14			85	0.993533
660			14	85	0.993533
661		14	85		0.993533
865	85			14	0.993533
1026	33	66			0.997452
1027	66		33		0.997452
1028	66			33	0.997452
1030	33	66			0.997452
1033	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain