SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6841

Length: 1840 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6841 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SRM4_RICCO	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	cytochrome p450	-	-	65%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	65%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	65%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPD9

Fln msg:

Fln protein: MDIGCLVWYSVVGITSAIICFVLDMLGRKTYYRLPPGPPGWPIVGNLFQLGKNPSESLFHLAEKYGPLMSLSLGMKITVVVSSPAMAKEVLKTHDHIFAGRIVNQVGRSLSHHKSSLVLCQYGSHWRMLRRISNTELFSVKRLEALRYLRRDQVNGMIHQIFEGSVKGSQCVNIGHTVFHSAFNLLSNMCFGTYMFDPHSGESEELKEAITKLMLLHTTPNLGDYFPFLQFLDLQGVFHQAVICRKKVHDIIGKFIEDRLATRGKSSDRSDDGKKDLLDVLLDMRSGEFTVTDIRGYLHDIFLAGSETTSSTIEWAMAELIRNPEILKRAQAELGEVAGLNRVVEESDVERLPYLRAVVKEVFRLHPAVPLLIPHRADSRCEIAGFVIPKHSRVLVNVWGMGRDPQIWNNPLKFMPERFLDDTEMRSVDYRGQNFELIPFGAGRRMCVGLPLANRMIHLVLASLLHSFEWAPPKGMSAEEVDMTEKFGLSLQRAVPLEAIPTPRLLSHAY*

Protein Length: 512

Fln nts: ATATATGATGAAAATCGTCTTGGGGTAGAGCCAGCTAGATCCATCCAGAACCCAAGGGAAAGAAGAGATATATGTAGTATCTCTCTCTGTTCTTTGCAGTGGCCGGCTTCGACTGCATCTAATCAGTTTCA_-_ATGGATATTGGATGCCTGGTTTGGTATTCTGTGGTGGGGATCACCTCCGCCATCATATGTTTTGTTTTGGATATGTTGGGGAGGAAGACTTATTACAGGCTTCCTCCAGGGCCTCCAGGATGGCCTATCGTAGGAAATCTGTTTCAGTTGGGGAAGAATCCTAGCGAATCTCTCTTCCACCTCGCCGAGAAATATGGGCCTCTGATGTCTCTCTCTCTGGGAATGAAAATCACAGTGGTGGTCTCTTCTCCCGCCATGGCAAAGGAAGTTCTCAAAACCCATGACCACATCTTTGCAGGCCGGATTGTGAACCAAGTAGGCAGGTCTCTTTCCCATCACAAGTCCTCACTTGTTTTGTGTCAATATGGATCTCACTGGCGCATGCTCAGACGCATATCTAACACTGAACTCTTCTCTGTCAAGAGGTTGGAAGCTCTGCGATATCTCAGAAGAGATCAAGTAAATGGAATGATTCATCAGATTTTTGAAGGTTCCGTGAAGGGATCACAGTGTGTAAATATCGGACACACTGTGTTCCACTCCGCGTTTAATCTGTTAAGCAACATGTGTTTTGGCACATACATGTTCGATCCCCATTCTGGGGAATCTGAAGAGTTGAAAGAAGCTATTACGAAATTGATGTTGCTTCATACGACCCCAAATTTGGGGGATTATTTTCCCTTTCTTCAGTTCTTGGATCTACAGGGTGTATTTCATCAGGCGGTAATCTGCAGGAAAAAGGTGCATGATATTATTGGTAAATTCATAGAGGATCGCCTGGCCACCAGAGGCAAAAGCAGCGACAGAAGTGACGATGGTAAGAAGGATCTCTTGGACGTTTTGCTGGACATGAGAAGCGGTGAATTTACTGTCACTGATATCAGGGGCTATTTACATGATATTTTTCTGGCCGGAAGTGAGACGACCTCTTCGACAATAGAGTGGGCGATGGCGGAACTCATCCGCAATCCCGAGATATTGAAACGAGCCCAAGCCGAATTGGGAGAGGTTGCGGGGCTCAACCGAGTGGTGGAAGAAAGTGATGTCGAGCGGCTCCCTTATCTCCGCGCAGTGGTAAAAGAAGTGTTCCGATTGCACCCGGCTGTTCCTCTGCTCATCCCGCACAGAGCAGACAGCCGTTGTGAGATTGCGGGGTTCGTGATACCCAAACACAGTCGTGTACTGGTTAATGTGTGGGGGATGGGAAGGGACCCACAGATTTGGAACAACCCATTGAAATTCATGCCAGAGAGATTTCTGGATGATACTGAGATGAGGAGTGTGGATTACAGAGGGCAAAACTTCGAGCTGATACCGTTCGGAGCAGGAAGGAGAATGTGCGTGGGGCTTCCGTTGGCGAATCGGATGATTCATCTGGTATTGGCTTCCCTGCTCCATTCATTCGAGTGGGCCCCTCCAAAGGGGATGAGTGCGGAAGAGGTGGACATGACAGAAAAGTTTGGACTGTCACTTCAAAGGGCGGTGCCTTTGGAGGCCATTCCCACGCCACGTCTGCTCTCTCATGCGTATTAG___AATTTAAAATTGTTGTTACCTTCACATCTACCGCGAAACGCTCCAGGTGACTTAAATGTTAAACGTTTTGTATGTTTAAGTACGTTAAATATTTTGTATGTTTAGAGATTTCGTGTTTGGAATTTATTTGCATTACTATCCATAAAACTTATTCAGAATATTATATTTTATTTTTT

Fln Alignment:

sp_v1.1_unigene6841___MDIGCLVWYSVVGITSAIICFVLDMLGRK--TYYRLPPGPPGWPIVGNLFQLGKNPSESLFHLAEKYGPLMSLSLGMKITVVVSSPAMAKEVLKTHDHIFAGRIVNQVGRSLSHHKSSLVLCQYGSHWRMLRRISNTELFSVKRLEALRYLRRDQVNGMIHQIFEGSVKGSQCVNIGHTVFHSAFNLLSNMCFGTYMFDPHSGESEELKEAITKLMLLHTTPNLGDYFPFLQFLDLQGVFHQAVICRKKVHDIIGKFIEDRLATXXXXXXXXXXXXXXXXXXXXDMRSGEFTVTDIRGYLHDIFLAGSETTSSTIEWAMAELIRNPEILKRAQAELGEVAGLNRVVEESDVERLPYLRAVVKEVFRLHPAVPLLIPHRADSRCEIAGFVIPKHSRVLVNVWGMGRDPQIWNNPLKFMPERFLDDTEMRSVDYRGQNFELIPFGAGRRMCVGLPLANRMIHLVLASLLHSFEWAPPKGMSAEEVDMTEKFGLSLQRAVPLEAIPTPRLLSHAY
B8LPD9______________MDIGRFVFYSLLGITSAIVYFVLDVWKKKKKTYCRLPPGPQGWPIVGNLFQLGKKPHESLFRLATKYGPLMSLSLGMKTTVVVSSPSMAKEVLKTHGHVFAGRIVTQAARSLSHDKSSFLLCQYGSRWRTLRRISNTELFSVKRLDALQDLRRVQVRGMIHQIFENSVKGSGCVNIGHIAFHSAFNLIGNMAFGKDMFDPHFRASEDLKDAISKLMVLHTAPNLADYFPCLQFLDLQGVYRNTGIYRKKAYDVMDKFIEDRLAKRGKNSDRTDDGKKDLLDVLLDMRSDEFTLTDIRGYLNDMFVAGSDTTAVTIEWAIAELVRNPEKLKRAQAELEEVIGLNRRLEESDTERLPYLRAVVKEVFRLHPAGPLLVPHRADGRFEIAGFVIPKHSRVLVNVWGMGRDPQIWNEPLKFVPERFIDDEMCGQMDYKGKDFELIPFGAGTRMCVGLPLASRMVHLVLGSLIHSFEWAPPKGMSAEQMDMTEKFGLALQKAVPLEAIATPRLLSHVY

SNPs (tot: 88)

Position	A %	C %	G %	T %	Probability
38	50		50		1.0
41	50		50		1.0
143	50		50		1.0
192	16		83		0.994512
193	83			16	0.994512
293		33	66		0.997452
348	66		33		0.997452
349		33		66	0.997452
362	33		66		0.997452
405			66	33	0.997452
406	66		33		0.997452
410			33	66	0.997452
411	33			66	0.997452
412		33		66	0.997452
413	33		66		0.997452
414		75	25		0.996473
417	25			75	0.996473
418	25	75			0.996473
419			25	75	0.996473
422	75	25			0.996473
426		75	25		0.996473
429	75		25		0.996473
683	25	75			0.996473
702	25	75			0.996473
706		75		25	0.996473
763		20	80		0.995493
784			80	20	0.995493
789		60	40		1.0
819	80		20		0.995493
952		88		11	0.923564
1179	60			40	1.0
1181	40			60	1.0
1185	40			60	1.0
1187	40	60			1.0
1189	60	40			1.0
1190		40		60	1.0
1192	40			60	1.0
1193			40	60	1.0
1194			20	80	0.995493
1195	80			20	0.995493
1198		80		20	0.995493
1199	80		20		0.995493
1201	25			75	0.996473
1335			66	33	0.997452
1484		20		80	0.995493
1506		90		10	0.90298
1515	90		10		0.90298
1547	10			90	0.90298
1548	80		20		0.999996
1557		90		10	0.90298
1579	90	10			0.90298
1581		10	90		0.90298
1612	18	81			0.999994
1645	88	11			0.923564
1646		88	11		0.923564
1649	88			11	0.923564
1650	88		11		0.923564
1651	11	66			0.999999
1653			10	90	0.90298
1658		10		90	0.90298
1659	10		90		0.90298
1662		10	90		0.90298
1663	10		90		0.90298
1668		10	90		0.90298
1670		10		90	0.90298
1671		90	10		0.90298
1672	10	90			0.90298
1674		90	10		0.90298
1706	33	66			1.0
1710	11			88	0.923564
1741	62	25		12	1.0
1742		87	12		0.992554
1743	12	25		62	1.0
1744		12	62		1.0
1745		75		12	0.975346
1746	87		12		0.992554
1747	50		12	37	1.0
1755	83	16			0.994512
1756		16	83		0.994512
1760	16		83		0.994512
1761	83		16		0.994512
1765			16	83	0.994512
1768	83		16		0.994512
1795		20	80		0.995493
1796		20	80		0.995493
1801		25	75		0.996473
1802		25	75		0.996473
1808	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain