SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6839

Length: 1260 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6839

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Superoxide dismutase [Fe], chloroplastic n=11 Tax=Brassicaceae RepID=SODF_ARATH	-	-	62%
FL-Next	sp=Superoxide dismutase; Pinus pinaster (Maritime pine).	-	-	85%
Blast2go	superoxide dismutase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Superoxide dismutase.	EC:1.15.1.1	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	circadian rhythm	GO:0007623	Biological Process	75%
Blast2go	response to copper ion	GO:0046688	Biological Process	75%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	75%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	75%
Blast2go	copper ion binding	GO:0005507	Molecular Function	75%
Blast2go	superoxide dismutase activity	GO:0004784	Molecular Function	75%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Manganese/iron superoxide dismutase	IPR001189	-	0.0	75%
Blast2go	Manganese/iron superoxide dismutase, N-terminal	IPR019831	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q6QJL0

Fln msg: Overlapping hits, possible frame ERROR between 693 and 566,

Fln protein: MALLHRPISLPLLPLAAPASFISHPKHIHLRKVAVPKFRSAPPTVALLNLNPPPYDFDALEPHMSKQTLSFHWGKHHRAYVDNCNNQIKDTELEECTLEDIIKKTYNNGDPRPVFNNAAQAWNHEFFWECMKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVLKDNKLVIEKTPNALNPLIWGHKPLLTIDVWEHAYYLDYQNRRPDYISTFMNELVSWDAVNARLDRAKASAT*

Protein Length: 252

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTTTTGTATTTATGTCCATCAATTGCTTTCCCCCGCCGTGTCACAGGGCACTCTAGTTTCTATATGAAAAAAACATTCAAAAGGAGAAAATTCATAAACATTCCGAAAGAGAGGCTTCAATCGTGGTCTCTCGGGTATAGAG_-_ATGGCGCTGCTGCACCGTCCAATTTCACTTCCGCTACTTCCATTGGCTGCACCTGCAAGTTTCATTTCTCATCCAAAACATATACATTTGCGAAAAGTAGCAGTTCCCAAGTTTCGAAGTGCTCCACCAACAGTTGCACTTCTTAATTTGAATCCTCCTCCCTATGATTTTGATGCATTAGAACCACATATGAGCAAACAGACTTTGTCTTTCCACTGGGGCAAGCATCATCGAGCTTATGTTGATAACTGTAACAATCAGATTAAGGATACAGAGCTGGAAGAGTGTACCTTAGAAGACATTATTAAGAAAACATATAACAACGGTGATCCTCGTCCAGTATTTAACAATGCTGCTCAGGCCTGGAATCATGAGTTCTTTTGGGAATGTATGAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTGTTTTAAAAGACAATAAACTTGTAATTGAAAAAACTCCAAATGCTCTGAATCCTCTTATCTGGGGTCATAAGCCGCTTCTGACCATAGATGTTTGGGAGCATGCGTATTACCTTGACTATCAGAATCGACGGCCAGATTACATATCGACATTTATGAATGAGCTTGTTTCCTGGGACGCTGTCAATGCTCGGCTTGATCGTGCCAAGGCTTCTGCAACATGA___TTGGTTTCTAGGACTTTAGCTTTTACATCTCCTGACAGTTATGATCTGTATAGTTTCCTATGACGGGTTATGTACATGAATAATTTCAACTAAATGCAGCTCTGTGGGATGAGTTATGTGCATTTCAAGAGCACAGTTCTAGTTGATGGGGCAGGGGTATACATGGAGAATCTTATAAAATAAACAATACCTCTAATGGTTTCTGCATTTTTTTTTGTTTACAGAGATGATTCTTCTTGAAAATTTGGTTCATATATaAGAACTGAGTAATAATGCGGCAAGACAAATAACAAGTGGTATTTACTTGGGCTCTGTTTGGGTTTTTTACATGCTAAGGGATT

Fln Alignment:

sp_v1.1_unigene6839___MALLHRPISXXXXXXXXXXSFISHPKHIHLRKVAVPKFRSAPPTVALLNLNPPPYDFDALEPHMSKQTLSFHWGKHHRAYVDNCNNQIKDTELEECTLEDIIKKTYNNGDPRPVFNNAAQAWNHEFFWECMXxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDNKLVIEKTPNALNPLIWGHKPLLTIDVWEHAYYLDYQNRRPDYISTFMNELVSWDAVNARLDRAKASAT
Q6QJL0______________MALLHRPISLPLLPLAAPASFISHPKHIHLRKVAVPKFRSAPPTVALLNLNPPPYDFDALEPHMSKQTLSFHWGKHHRAYVDNCNNQIKDTELEECTLEDIIKKTYNNGDPRPVFNNAAQAWNHEFFWECMKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDNKLVIEKTPNALNPLIWGHKPLLTIDVWEHAYYLDYQNRRPDYISTFMNELVSWDAVNARLDRAKASAT

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
586		25		75	0.996473
609	20			40	1.0
610	40			60	1.0
623		80		20	0.995493
663			87	12	0.992554
671	87			12	0.992554
805	20		80		0.995493
834		85		14	0.993533
1024	22	77			1.0
1116		20		80	0.999996
1117	80	20			0.999996
1147			60	40	1.0
1181		40		60	1.0
1235		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain