SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6834

Length: 1106 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6834

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homeodomain protein HB2 n=1 Tax=Picea abies RepID=Q8S555_PICAB	-	-	90%
FL-Next	tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa).	-	-	97%
Blast2go	homeodomain protein ahdp	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	root development	GO:0048364	Biological Process	0.0	84%
Blast2go	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipid-binding START	IPR002913	-	0.0	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8S555

Fln msg: your sequence is shorter than subject: 347 - 708

Fln protein: VDGLRDNSPAGFMKCRRLPSGCLIQDMPNGYSKVTWVEHAEYDDRGVHRLYRSLLNSGMAFGAQRWLATLQRQCECLAILMATANVSARDPTAIPTPNGRRSMLRLAQRMTDNFCAGVSASTVHTWNKLSGNIDDDVRVMTRKSVDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIPKGQDPGNCVSLLRASAMNSNQSSSMLILQETCTDASGSLVVYAPVDIPAMHVVMSGGDPAYVALLPSGFAILPDGPECRPLALNPTGNGVGVNSPRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCEDA*

Protein Length: 348

Fln nts: TGTTGATGGCCTTCGAGATAATTCGCCTGCAGGATTTATGAAATGCAGGAGATTGCCTTCTGGTTGTTTGATTCAGGACATGCCCAACGGGTATTCCAAGGTGACATGGGTAGAGCATGCGGAGTATGATGATCGTGGAGTGCACAGGCTTTACCGTTCTCTGTTAAATTCCGGGATGGCTTTTGGAGCACAGCGTTGGCTGGCAACTTTACAACGTCAGTGTGAGTGCCTTGCTATTCTCATGGCAACAGCAAACGTTTCAGCAAGAGATCCCACGGCCATACCGACTCCCAATGGACGTCGCAGCATGTTGAGACTTGCGCAACGCATGACGGACAATTTCTGTGCTGGAGTGAGTGCGTCGACTGTACACACCTGGAATAAGCTCTCTGGTAACATTGATGACGATGTTCGTGTTATGACAAGAAAGAGCGTTGATGACCCTGGAGAGCCACCTGGTGTCGTGCTGAGCGCGGCCACATCAGTGTGGCTTCCTGTTTCTCCGCAAAGATTATTTGATTTCTTGAGGGATGAGAGACTCAGAAGCGAGTGGGATATACTGTCAAATGGAGGTCCAATGCAAGAAATGGCTCACATTCCTAAAGGACAAGATCCTGGCAACTGTGTTTCTCTTCTAAGAGCAAGCGCCATGAATTCCAACCAAAGCAGCAGCATGTTGATCCTGCAAGAGACTTGCACAGATGCATCGGGGTCTCTTGTAGTTTATGCTCCAGTGGACATCCCAGCCATGCATGTGGTTATGAGTGGGGGTGATCCAGCTTATGTTGCCCTCTTACCCTCTGGCTTTGCCATTCTTCCAGACGGACCAGAATGCAGGCCCCTTGCACTAAACCCTACTGGAAATGGCGTTGGAGTCAACAGCCCGCGTGTGGGAGGATCACTTTTAACAGTTGCATTCCAGATATTAGTCAACAGCTTGCCAACAGCCAAACTCACAGTAGAATCAGTGGAGACAGTGAACAACCTCATATCCTGTACCGTGCAGAAAATCAAGGCAGCTCTGCACTGTGAAGATGCTTGA___CCTAAATCTCTCCCTCTTAATCCTCACTGTCTAGTTTTTTTGTGTCCCCATAAGCTTTTTTGTT

Fln Alignment:

sp_v1.1_unigene6834___VDGLRDNSPAGFMKCRRLPSGCLIQDMPNGYSKVTWVEHAEYDDRGVHRLYRSLLNSGMAFGAQRWLATLQRQCECLAILMATANVSARDPTAIPTPNGRRSMLRLAQRMTDNFCAGVSASTVHTWNKLSGNIDDDVRVMTRKSVDDPGEPPGVVLSAATSVWLPVSPQXXXXXXXXXXXXSEWDILSNGGPMQEMAHIPKGQDPGNCVSLLRXXXXXXXXXXXXLILQETCTDASGSLVVYAPVDIPAMHVVMSGGDPAYVALLPSGFAILPDGPECRPLALNPTGNGVGVNSPRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCEDA
Q8S555______________VDSLRDNSPAGFMKCRRLPSGCLIQDMPNGYSKVTWVEHAEYDDRGVHRLYRSLLNSGMAFGAQRWLATLQRQCECLAILMATANVTARDPTAIRTPNGRRSMLRLAQRMTDNFCAGVSASTVHTWNKLSGNIDDDVRVMTRKSVDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIPKGQDPGNCVSLLKASAMNSNQSSSMLILQKTCTNASGSLVVYAPVDIPAMHVVMSGGDPPYVALLPSGFAILPNGPKCRPLALNPSGNGVGVNSPRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCEDA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
247	80		20		0.995493
394		12		87	0.992554
395	87		12		0.992554
629	14			85	0.993533
638	83		16		0.994512
712			80	20	0.995493
736	66		33		0.997452
824	11		88		0.999952
829	88			11	0.999952
869	13		86		0.999973
882			83	16	0.999991
946	77	22			0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain