SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6833

Length: 448 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene6833
CGTCGTGACCTTGGCTGTCACTCAAATTTTATATACTGGACTTTATCTTCTTATTTGGGGAGAAGCTGCAAATCTACGGTTTATGCCAGAATGCCTCTGTTATATTTACCATCATATGGCATATGAACTCTTTGGGTTGTTAGGTGGCAATGTGAGCACTGTGACTGGGGAAAATATAAAGCCAGCATATGGTGGTGAGGAGGAATCCTTCCTTAAAAAAGTTGTGACTCCAATATATAATGTTATTTCAGAGGAAGTCAAGAGAAATAGAAACGGGACAGCCAAACACTCGCAATGGAGGAACTATGATGATCTGAATGAATTTTTCTGGTCAGTTGATTGTTTTCGCCTTGGCTGGCCAATGCCTGCAGATGCAGATTTTTTTATGTACCAAAAGAATTTGAAAAACATTCATCCGTGAAGGAGACTGCACAGAGGCAGGGGCACC

Ace file of the UniGene sp_v1.1_unigene6833

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATGSL12 (glucan synthase-like 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups; K11000 callose synthase [EC:2.4.1.-]	-	-	78%
FL-Next	sp=Callose synthase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	atgsl12 (glucan synthase-like 12) -beta-glucan synthase transferring glycosyl groups	-	-	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	78%

Source	KEGGs	Term	Identity
AutoFact	Fructose and mannose metabolism	00051	78%
AutoFact	N-Glycan biosynthesis	00510	78%
AutoFact	Mucin type O-Glycan biosynthesis	00512	78%
AutoFact	Various types of N-glycan biosynthesis	00513	78%
AutoFact	Other types of O-glycan biosynthesis	00514	78%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	78%
AutoFact	Glycosaminoglycan biosynthesis - keratan sulfate	00533	78%
AutoFact	Lipopolysaccharide biosynthesis	00540	78%
AutoFact	Peptidoglycan biosynthesis	00550	78%
AutoFact	Glycerolipid metabolism	00561	78%
AutoFact	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	78%
AutoFact	Sphingolipid metabolism	00600	78%
AutoFact	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	78%
AutoFact	Glycosphingolipid biosynthesis - globo series	00603	78%
AutoFact	Glycosphingolipid biosynthesis - ganglio series	00604	78%
AutoFact	Carotenoid biosynthesis	00906	78%
AutoFact	Zeatin biosynthesis	00908	78%
AutoFact	Flavonoid biosynthesis	00941	78%
AutoFact	Anthocyanin biosynthesis	00942	78%
AutoFact	Flavone and flavonol biosynthesis	00944	78%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	78%
AutoFact	Betalain biosynthesis	00965	78%
AutoFact	Biosynthesis of type II polyketide products	01057	78%
AutoFact	Metabolic pathways	01100	78%
AutoFact	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LXT9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1501 aas, your sequence is shorter than subject: 140 - 1964

Fln protein: VVTLAVTQILYTGLYLLIWGEAANLRFMPECLCYIYHHMAYELFGLLGGNVSTVTGENIKPAYGGEEESFLKKVVTPIYNVISEEVKRNRNGTAKHSQWRNYDDLNEFFWSVDCFRLGWPMPADADFFMYQKNLKNIHP*

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTATATACTGGACTTTATCTTCTTATTTGGGGAGAAGCTGCAAATCTACGGTTTATGCCAGAATGCCTCTGTTATATTTACCATCATATGGCATATGAACTCTTTGGGTTGTTAGGTGGCAATGTGAGCACTGTGACTGGGGAAAATATAAAGCCAGCATATGGTGGTGAGGAGGAATCCTTCCTTAAAAAAGTTGTGACTCCAATATATAATGTTATTTCAGAGGAAGTCAAGAGAAATAGAAACGGGACAGCCAAACACTCGCAATGGAGGAACTATGATGATCTGAATGAATTTTTCTGGTCAGTTGATTGTTTTCGCCTTGGCTGGCCAATGCCTGCAGATGCAGATTTTTTTATGTACCAAAAGAATTTGAAAAACATTCATCCGTGAAGGAGACTGCACAGAGGCAGGGGCACC

Fln Alignment:

sp_v1.1_unigene6833___QILYTGLYLLIWGEAANLRFMPECLCYIYHHMAYELFGLLGGNVSTVTGENIKPAYGGEEESFLKKVVTPIYNVISEEVKRNRNGTAKHSQWRNYDDLNEFFWSVDCFRLGWPMPADADFF
Q9LXT9______________KLLYMALYLLIWGEAANLRFMPECLCYIYHHMAFELYGMLAGNVSPMTGENVKPAYGGEEDAFLRKVVTPIYEVIQMEAQRSKKGKSKHSQWRNYDDLNEYFWSVDCFRLGWPMRADADFF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
238	83		16		0.994512
239		16		83	0.994512
240	83	16			0.994512
244		16		83	0.994512
248	16			83	0.994512
250		83	16		0.994512
253	83			16	0.994512
365	16		83		0.994512
367		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain