SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6797

Length: 1998 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6797
CGTCGTGACCTTGGCTGTCACTCATTTTCCAACCCAAATTTGGTTGCCCGTCACCATTAGTTGAGTTGCGTCTTTCAGCCCACCTAAACCGGTTTTAACACTAAATTATTAGGAAAATCGCTGTAAATTAGTCCATTTCATCCAGTGGAAAGTGCATTAAAAGTCAAATGGACTGTAGCAGTTTGCGAATGTCATCCCATTGTATATCAACTGGATTGTAACAGTTTGCAAGAGTTATGCCATTGTTTGTCCTCTATTATTTTGGTGGTTAACTTGGGTGCCCTTTTTAGTAATATGCCCACGGTAGGTGTTGAGTGCCTTCATAGACCATTCACAGAAGAGGACCAAGTATTGAATCACTATTGAATATTGCCATGTGCCCTTTCCGTTGTGCCTTTTCATAGGACGAAGGGGAAAGAGCCAGCATCTGCCCATTAAAGCATTGGAAAGATCAAGCAGCCTTCAAATTGGGTTTATATAAATTTGATGTCACCACCCTCTCACTCATTATAGTGTGGGAATTGATATTTGATTCAATCATACCTCCTCCTCAACACTTCTATTCTGTTCTGTGGAGATGGCTCATCCCATTGTCATCAAGGGTGCCTTCTGTATGCCTCACGTGACTACTTCCTTCGCAAACAATGACAAAGCATTTTATAATTGTAAATTCCAGGATTCAACTCTGCAATTCTCTGGCAAAGCATGGGCACTCCAATGTCCAGGGAAGCCAAGGTTGAAGAGCAAGTCAAAAGTGTGGATGTCAGTACAACAGGTAACTACAAAGTCTAAGGTTAGTGTTACCCCTCTCAATCTCGAGGATGCAAAAGATCCTCCTCTCAATTTGTACAGGCCTAAAGAGCCCTACACAGCAACTATTGTCTCTGTGGAGAGTCTTGTTGGTCCAAAAGCACCAGGAGAAACTTGTCAAATTGTTATTGATCATGGAGGAAATGTTCCATATTGGGAAGGTCAGAGTTATGGGGTCATTCCTCCCGGTGAGAACCCCAAGAAACCTGGCACACCCAATACTGTTCGTCTTTACTCCATTGCTTCAACAAGATATGGAGATTCCTTTGATGGGAAAACAGGAACTTTGTGTGTTAGAAGAGCTGTTTACTATGATCCAGTGACTGGAAAGGAGGACCCGTCCAAGAATGGAATTTGCAGCAACTATCTCTGTGACAGAAAACCAGGAGACAAGGTTAAAATTACAGGTCCATCTGGAAAAGTAATGCTTCTACCAGAAGATGATCCAAATGCAACCCACATAATGATAGCCACTGGTACAGGAATAGCTCCTTTTAGGGGATACCTACGGAGAATGTTTATGGAGGATGTTCCATCATTCAAATTTGGAGGACTTGCTTGGCTTTTCCTGGGAGTTGCTAACACCGATAGTCTTCTCTACAATGATGAATTTACAGAGTATACAAAGCAGTACCCTAAGAACTTTAGATACGATACTGCATTGAGTAGAGAGCATAAGAACAAAAGAGGGGGCAAGATGTATGTGCAAGACAAGATTGAGGAGTACAGTGATGAAATTTTTGAGCTTCTGGATAAAGGAGCTCATATCTACTTCTGTGGATTGAAGGGCATGATGCCTGGAATTCAAGATACCTTAAAAAGAGTTGCAGAAGAGAGAGGAGAAAGTTGGGATGAGAGATTTTCACAGCTTAAGAAGAAAAAGCAGTGGCATGTAGAAGTTTATTAGTAATTTTATAGAGCTTAACTTCATCCTCCTAGGGCAATCTCCAATAAACCTTGGCCAAATTGATAGTTATTGTTTTGTCTTTTTGAGAATATCAATCTAAGATTTTATATGCAAGGCTCAACTATATTTAATTTTTCATCATTGTGTGGAATTTGTGAATTTTTTTTGCTGATATTAAAGTTTTGGCCATATAATTGCAGAGGCCACATTTTTTGCATTCCTTGCTAATCTGCTTCAGTTCCAATTGCAAATTCTATTGAAGAGAAAGAAAGACAATAATT

Ace file of the UniGene sp_v1.1_unigene6797

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ferredoxin--NADP reductase n=1 Tax=Ricinus communis RepID=B9SB31_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	ferredoxin-nadp+ reductase-like protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	copper ion binding	GO:0005507	Molecular Function	87%
Blast2go	membrane-bounded organelle	GO:0043227	Cellular Component	87%
Blast2go	intracellular organelle	GO:0043229	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	87%
Blast2go	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	87%
Blast2go	Ferredoxin-NADP+ reductase	IPR012146	-	87%
Blast2go	Ferredoxin Reductase	IPR015701	-	87%
Blast2go	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	87%
Blast2go	Riboflavin synthase-like beta-barrel	IPR017938	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNX5

Fln msg:

Fln protein: MAHPIVIKGAFCMPHVTTSFANNDKAFYNCKFQDSTLQFSGKAWALQCPGKPRLKSKSKVWMSVQQVTTKSKVSVTPLNLEDAKDPPLNLYRPKEPYTATIVSVESLVGPKAPGETCQIVIDHGGNVPYWEGQSYGVIPPGENPKKPGTPNTVRLYSIASTRYGDSFDGKTGTLCVRRAVYYDPVTGKEDPSKNGICSNYLCDRKPGDKVKITGPSGKVMLLPEDDPNATHIMIATGTGIAPFRGYLRRMFMEDVPSFKFGGLAWLFLGVANTDSLLYNDEFTEYTKQYPKNFRYDTALSREHKNKRGGKMYVQDKIEEYSDEIFELLDKGAHIYFCGLKGMMPGIQDTLKRVAEERGESWDERFSQLKKKKQWHVEVY*

Protein Length: 381

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCCAACCCAAATTTGGTTGCCCGTCACCATTAGTTGAGTTGCGTCTTTCAGCCCACCTAAACCGGTTTTAACACTAAATTATTAGGAAAATCGCTGTAAATTAGTCCATTTCATCCAGTGGAAAGTGCATTAAAAGTCAAATGGACTGTAGCAGTTTGCGAATGTCATCCCATTGTATATCAACTGGATTGTAACAGTTTGCAAGAGTTATGCCATTGTTTGTCCTCTATTATTTTGGTGGTTAACTTGGGTGCCCTTTTTAGTAATATGCCCACGGTAGGTGTTGAGTGCCTTCATAGACCATTCACAGAAGAGGACCAAGTATTGAATCACTATTGAATATTGCCATGTGCCCTTTCCGTTGTGCCTTTTCATAGGACGAAGGGGAAAGAGCCAGCATCTGCCCATTAAAGCATTGGAAAGATCAAGCAGCCTTCAAATTGGGTTTATATAAATTTGATGTCACCACCCTCTCACTCATTATAGTGTGGGAATTGATATTTGATTCAATCATACCTCCTCCTCAACACTTCTATTCTGTTCTGTGGAG_-_ATGGCTCATCCCATTGTCATCAAGGGTGCCTTCTGTATGCCTCACGTGACTACTTCCTTCGCAAACAATGACAAAGCATTTTATAATTGTAAATTCCAGGATTCAACTCTGCAATTCTCTGGCAAAGCATGGGCACTCCAATGTCCAGGGAAGCCAAGGTTGAAGAGCAAGTCAAAAGTGTGGATGTCAGTACAACAGGTAACTACAAAGTCTAAGGTTAGTGTTACCCCTCTCAATCTCGAGGATGCAAAAGATCCTCCTCTCAATTTGTACAGGCCTAAAGAGCCCTACACAGCAACTATTGTCTCTGTGGAGAGTCTTGTTGGTCCAAAAGCACCAGGAGAAACTTGTCAAATTGTTATTGATCATGGAGGAAATGTTCCATATTGGGAAGGTCAGAGTTATGGGGTCATTCCTCCCGGTGAGAACCCCAAGAAACCTGGCACACCCAATACTGTTCGTCTTTACTCCATTGCTTCAACAAGATATGGAGATTCCTTTGATGGGAAAACAGGAACTTTGTGTGTTAGAAGAGCTGTTTACTATGATCCAGTGACTGGAAAGGAGGACCCGTCCAAGAATGGAATTTGCAGCAACTATCTCTGTGACAGAAAACCAGGAGACAAGGTTAAAATTACAGGTCCATCTGGAAAAGTAATGCTTCTACCAGAAGATGATCCAAATGCAACCCACATAATGATAGCCACTGGTACAGGAATAGCTCCTTTTAGGGGATACCTACGGAGAATGTTTATGGAGGATGTTCCATCATTCAAATTTGGAGGACTTGCTTGGCTTTTCCTGGGAGTTGCTAACACCGATAGTCTTCTCTACAATGATGAATTTACAGAGTATACAAAGCAGTACCCTAAGAACTTTAGATACGATACTGCATTGAGTAGAGAGCATAAGAACAAAAGAGGGGGCAAGATGTATGTGCAAGACAAGATTGAGGAGTACAGTGATGAAATTTTTGAGCTTCTGGATAAAGGAGCTCATATCTACTTCTGTGGATTGAAGGGCATGATGCCTGGAATTCAAGATACCTTAAAAAGAGTTGCAGAAGAGAGAGGAGAAAGTTGGGATGAGAGATTTTCACAGCTTAAGAAGAAAAAGCAGTGGCATGTAGAAGTTTATTAG___TAATTTTATAGAGCTTAACTTCATCCTCCTAGGGCAATCTCCAATAAACCTTGGCCAAATTGATAGTTATTGTTTTGTCTTTTTGAGAATATCAATCTAAGATTTTATATGCAAGGCTCAACTATATTTAATTTTTCATCATTGTGTGGAATTTGTGAATTTTTTTTGCTGATATTAAAGTTTTGGCCATATAATTGCAGAGGCCACATTTTTTGCATTCCTTGCTAATCTGCTTCAGTTCCAATTGCAAATTCTATTGAAGAGAAAGAAAGACAATAATT

Fln Alignment:

sp_v1.1_unigene6797___QVTTKSKVS--VTPLNLEDAKDPPLNLYRPKEPYTATIVSVESLVGPKAPGETCQIVIDHGGNVPYWEGQSYGVIPPGENPKKPGTPNTVRLYSIASTRYGDSFDGKTGTLCVRRAVYYDPVTGKEDPSKNGICSNYLCDRKPGDKVKITGPSGKVMLLPEDDPNATHIMIATGTGIAPFRGYLRRMFMEDVPSFKFGGLAWLFLGVANTDSLLYNDEFTEYTKQYPKNFRYDTALSREHKNKRGGKMYVQDKIEEYSDEIFELLDK-GAHIYFCGLKGMMPGIQDTLKRVAEERGESWDERFSQLKKKKQWHVEVY
A9NNX5______________QVTTEAPATTKVVKISKKNEEGVVVNKYKPKTPYIGRVLLNTKITADDAPGETWHMVFSTEGELPYREGQSIGVIPTGID--KNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY----TNDQGEVVKGVCSNFLCDLKPGEEVTITGPVGKEMLMPVD-PNATIIMLATGTGIAPFRGYLWKMFFEKHPDYKFNGLAWLFLGVPTSSSLIYKEEFEKMKEKSPDKIRVDFAVSREQTNEKGEKMYIQTRMGEYAKELWGLFKKENTYVYMCGLKGMEKGIDDIITSLAAEEGIDWNEYKRQMKKSERWNVEVY

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
231	66			33	0.997452
232			33	66	1.0
233	33		66		1.0
235			33	66	1.0
236			33	66	1.0
319	25	75			0.996473
321			25	75	0.996473
322		75	25		0.996473
374		87	12		0.992554
375	75		25		1.0
380	12	87			0.992554
386			12	87	0.992554
388		87		12	0.992554
391		12		87	0.992554
392	12		87		0.992554
393		12		87	0.992554
394			87	12	0.992554
396	12	87			0.992554
402	87		12		0.992554
443	62		37		1.0
444	12			87	0.992554
460	20		80		0.999996
461		80		20	0.999996
462		80	20		0.999996
463			22	77	0.999999
464			22	77	0.999999
465	11	77	11		0.968132
1167			13	86	0.999973
1512		5		94	0.9982

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain