SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6787

Length: 1792 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6787

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine carboxypeptidase S28 family protein; K01285 lysosomal Pro-X carboxypeptidase [EC:3.4.16.2]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
AutoFact	Lysosomal Pro-Xaa carboxypeptidase.	EC:3.4.16.2	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S28	IPR008758	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX2

Fln msg: your sequence is shorter than subject: 492 - 509

Fln protein: EFSIINREKSFLQSSQYEYETKYFTQRLDHFSFKNYENSTFQQRYLINDKYWLGAERMGPIFLYCGNEGYIDWFAVNTGFMWDIAPQFGALLVFPEHRYYGESMPYGNQSVAYKDGDSLSYLTAEQALADFATLIVDLKKNLSAKACPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALETYGERDEGLQNLSKKFRMCRDLKSTEEVQNWLSSAYSNLAMVDYPYPASFLMPLPGFPIREVCKVIDSFSNGTDVLDQIFAGVSVYYNYTGEEKCFDVNDDPHGENGWNWQACTEMVMPMSSNPENSIFPQFTFDMDSYKQDCLNMFGVEPRAHWITTEFGGHDIQKVLKNYGSNIIFSNGLLDPWSGGGVLQNISSSIVALVTELGAHHLDLRAATENDPIWLVEQRNAEIQIINNWMNEYYQNIGIYTSEILGKNEYYQDKGIYASEI*

Protein Length: 493

Fln nts: GCGAGTTTTCAATTATTAACCGAGAGAAGTCATTTTTACAATCATCACAGTACGAGTACGAGACCAAGTATTTCACACAAAGGCTTGATCATTTTAGCTTCAAGAATTATGAGAATTCAACGTTCCAGCAGCGTTATCTCATAAATGACAAGTACTGGCTAGGGGCAGAACGTATGGGGCCTATCTTTCTTTATTGCGGGAATGAGGGCTACATTGACTGGTTTGCTGTGAACACTGGATTTATGTGGGACATAGCACCTCAGTTCGGAGCTCTGCTCGTCTTTCCAGAACACCGCTACTATGGAGAGTCTATGCCCTATGGCAATCAGAGTGTGGCCTACAAGGATGGAGATTCACTATCTTATCTCACAGCTGAGCAAGCACTGGCTGATTTTGCAACTTTGATAGTAGACCTAAAAAAGAACCTATCTGCCAAGGCTTGTCCAGTTGTCTTGTTTGGTGGTTCTTATGGTGGAATGTTAGCTGCTTGGATGAGGTTGAAATATCCACATATTGCAATAGGTGCCCTAGCTTCATCTGCTCCAATATTGCAGTTTGAAGACATTGTACCATCTGATACATTCTACAATCTTGTTTCCAATGATTTCAAGCGGGAAAGTGAGAACTGTTTCAAGGTGATACAGCAATCATGGAAAGCATTGGAGACATATGGTGAAAGAGATGAAGGGTTACAAAATCTTAGCAAGAAGTTTCGCATGTGCAGGGATCTCAAAAGCACAGAGGAAGTACAAAACTGGTTAAGCTCAGCATACAGTAACCTTGCTATGGTGGACTATCCATATCCAGCTAGTTTCTTAATGCCTTTGCCTGGCTTCCCAATAAGAGAGGTCTGCAAAGTGATTGATAGTTTTTCTAATGGCACGGATGTGTTGGACCAAATATTTGCGGGTGTTAGCGTTTACTACAACTATACAGGAGAAGAAAAATGTTTTGACGTCAATGATGATCCTCATGGCGAAAACGGGTGGAATTGGCAGGCTTGCACGGAGATGGTTATGCCTATGTCTAGCAATCCAGAGAACAGCATTTTCCCTCAGTTTACTTTCGACATGGACTCATACAAACAAGATTGTTTGAATATGTTTGGTGTAGAACCACGAGCTCACTGGATAACAACGGAATTTGGTGGTCATGACATACAGAAAGTATTGAAAAACTACGGTAGCAATATAATTTTCTCAAATGGTCTTTTGGACCCCTGGAGCGGGGGAGGTGTTCTTCAAAACATTTCGAGCAGCATTGTAGCACTCGTAACAGAGCTAGGTGCCCATCACTTGGATTTGCGTGCGGCAACGGAAAATGATCCAATTTGGCTAGTAGAGCAACGAAATGCGGAAATTCAAATTATAAATAATTGGATGAATGAATACTATCAAAACATAGGAATTTATACCTCTGAAATTTTGGGCAAGAATGAGTACTATCAAGACAAAGGAATTTATGCTTCTGAAATTTAG___GGGCAAATATTGCCCTTCTGGTGGGCATGATTAATACCAACCAGTTTCTGTCTGTTTTGAGCCTGTTTGTGTTGCGTGTTGTAGAACATTTGGGTTAAATAGAAGACAAACACGTGCCAAACAGTTGGTGCCAGAAATTAGTGAAAACTGATCCTTACATCACAGTGTATCGAATGAGTTTGTGGATCAATTTCATTGACTTCCTGAAGTGGAGTTTGTGACTTGTAGAAATGAAAATTTCATTTTAACATTATTATTATTTTTGAAATTGTTTCCCATGCGACATTGAAAATCAATTCGCCCTTATATTAAGG

Fln Alignment:

sp_v1.1_unigene6787___EFSIINREKSFLQSSQYEYETKYFTQRLDHFSFKNYENSTFQQRYLINDKYWLGAERMGPIFLYCGNEGYIDWFAVNTGFMWDIAPQFGALLVFPEHRYYGESMPYGNQSVAYKDGDSLSYLTAEQALADFATLIVDLKKNLSAKACPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALETYGERDEGLQNLSKKFRMCRDLKSTEEVQNWLSSAYSNLAMVDYPYPASFLMPLPGFPIREVCKVIDSFSNGTDVLDQIFAGVSVYYNYTGEEKCFDVNDDPHGENGWNWQACTEMVMPMSSNPENSIFPQFTFDMDSYKQDCLNMFGVEPRAHWITTEFGGHDIQKVLKNYGSNIIFSNGLLDPWSGGGVLQNISSSIVALVTELGAHHLDLRAATENDPIWLVEQRNAEIQIINNWMNEYYQNIGIYTSEI
B8LPX2______________EFSTLNREKSFLQSSQYEYETKYFTQRLDHFSFKNHKNSTFQQRYLINDKYWLGAERMGPIFYYCGNEGYIDWFAVNTGFMWDIAPQFGALLVFPEHRYYGESMPYGSQSMAYKDGDSLSYLTAEQALADFATLIVDLKKNLSAEACPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALETYGERDEGLQNLSKKFRMCRDLNSTDEIEDWLNSAYSNLAMVDYPYPASFLMPLPAYPIKEVCKVIDSFSNGTDVLDRIFAGVSVYYNYTGEEKCFDVNDDPHGENGWNWQACTEMVMPMSSNPESSIFPQFTFDIESYTKNCLNMFGVEPRPHWITTEFGGQDIKRVLKNYGSNIIFSNGLLDPWSGGGVLQNISNSIVALVTELGAHHLDLRAATENDPLWLVEQRNAEMKIINKWMNEYYQDKGIYTFEI

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
69	25			75	0.996473
131	28		71		1.0
647	20		80		0.995493
672		16	83		0.994512
676	83	16			0.994512
677	83		16		0.994512
678	83			16	0.994512
681		16	83		0.994512
682	83	16			0.994512
684			83	16	0.994512
685	83		16		0.994512
686	83		16		0.994512
687		16	83		0.994512
688			83	16	0.994512
691		16		83	0.994512
694	83			16	0.994512
695	83	16			0.994512
708	85			14	0.993533
710		14	85		0.993533
713		14		85	0.993533
715			85	14	0.993533
723	85			14	0.993533
724			85	14	0.993533
725			85	14	0.993533
728			14	85	0.993533
729	14	85			0.993533
733	85	14			0.993533
734	85	14			0.993533
735	85			14	0.993533
742	85	14			0.993533
744	14		85		0.993533
851		16		83	0.994512
950		50		50	1.0
1026		12		87	0.992554
1440	17			82	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1728	1739	ATT ATT ATT ATT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain