SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6767

Length: 1108 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6767

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Strictosidine synthase, putative n=1 Tax=Ricinus communis RepID=B9RJ21_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	strictosidine synthase family protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	75%
Blast2go	Strictosidine synthase, conserved region	IPR018119	-	0.0	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW47

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 296 - 423

Fln protein: MKMLGQLMKTWQFTFTVHRPYIIFAHSKTYKRKMCQRLIYWGSLSDECSQRRFDKMRNIIGALMLGLGIYAALDPFHHSPIADFPEFKAHYIECPPWAEYSKFPTDSNNRLQKADLKSLDEVSGPESLAFDPENRGPYTGTADGRILRWDGPKLGWSQFSYTSPNRSEICDKAHKSPLGYVKHEHICGRPLGLRFNKITGDLYIADAYFGLLVVGPQGGLATPLSTEAEGVPFKFTNDLDIDMDGNAYFTDSSTIYQRKNFIQLVFSAEDSGRVLKFDPRTRQTQVLVRGIRFPNG

Protein Length: 297

Fln nts: GCAGCCTTTGTACATATTTTAACACATAATTCTCTGGGTTAAAATATGTACAAAGGCTGCTGTAGGTGTCAAAAGAATGGAATCTGTAGATAAAATTTTCATTGAAAGAATGGAAGACATCAACAGGATTCCTCTGGAGCGGTAATGGTTACCAGGGAGCACAACGGCGCAGTCCCTACTGAAGGTGTGGTCTGCCTGGCTGTTTAATTCCGAGCGTTTA_-_ATGAAGATGTTGGGGCAATTAATGAAAACTTGGCAGTTCACATTTACTGTTCACCGGCCATACATAATTTTTGCTCACTCGAAAACCTATAAGAGGAAGATGTGCCAACGACTTATCTATTGGGGAAGTCTCAGTGACGAGTGCAGCCAGAGAAGATTTGATAAAATGAGAAACATAATAGGGGCTCTAATGTTAGGGTTGGGAATATATGCAGCACTGGATCCATTCCATCACAGCCCAATTGCAGATTTTCCCGAATTCAAGGCCCATTACATCGAATGCCCTCCATGGGCTGAATACTCCAAATTTCCAACAGATTCCAACAACAGACTGCAGAAAGCGGATCTGAAATCGTTGGATGAAGTTTCAGGACCAGAGAGCCTAGCCTTTGATCCTGAGAACAGAGGACCCTACACTGGTACTGCAGATGGCAGAATCTTGCGTTGGGATGGCCCAAAGCTTGGCTGGTCTCAATTCTCCTACACATCTCCAAACAGGTCTGAGATATGTGACAAGGCACATAAGTCTCCATTAGGTTATGTGAAGCACGAGCATATATGCGGTCGGCCTCTTGGACTGAGATTTAATAAGATCACAGGAGATCTGTATATTGCTGATGCATATTTCGGCTTGCTTGTGGTTGGTCCCCAAGGTGGATTAGCCACACCACTTTCTACAGAGGCAGAAGGCGTTCCATTCAAGTTTACTAATGATCTCGACATAGACATGGATGGGAATGCTTATTTTACAGACAGCAGTACTATATACCAGAGAAAAAACTTCATACAGTTGGTATTCTCAGCAGAGGATAGTGGCAGGGTTCTGAAATTCGATCCCAGAACTAGACAAACCCAAGTGTTGGTCAGAGGTATCCGTTTCCCAAATGGG

Fln Alignment:

sp_v1.1_unigene6767___IFAHSKTYKRKMCQRLIYWGSLSDECSQRRFDKMRNIIGALMLGLGIYAALDPFHHSPIADFPEFKAHYIECPPWAEYSKFPTDSNNRLQKADLKSLDEVSGPESLAFDPENRGPYTGTADGRILRWDGPKLGWSQFSYTSPNRSEICDKAHKSPLGYVKHEHICGRPLGLRFNKITGDLYIADAYFGLLVVGPQGGLATPLSTEAEGVPFKFTNDLDIDMDGNAYFTDSSTIYQRKNFIQLVFSAEDSGRVLKFDPRTRQTQVLVRGIRFPNG
A9NW47______________MFSPSKSYKKKMRQRLIYWGSLSDNCSKRRFGKMRIIIGAIVLGLGIYAALDPFHHSPIADFPDFKAHTIECPPWAEFSIFPTDSNNRLQKADLKSLNGVSGPESLAFDPENKGPYTGTADGRILRWDGPNLGWSQFAYTSPNRSEICDKAHKSSLAYVKHEHICGRPLGLRFNNITGDLYIADAYFGLLVVGPQGGLATPLATEAEGVPFKFTNDLDIDMDGNVYFTDSSTIYQRKNFIVLVFSAEDSGRVLKFDPRTGQTQVLARGIRLPNG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
880		28		71	1.0
886	71		28		1.0
892	71			28	1.0
894	28	71			1.0
897		14		85	0.993533
934	28			71	1.0
943		71	28		1.0
966		71		28	1.0
988		28		71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain