SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6754

Length: 2204 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6754
CGTCGTGACCTTGGCTGTCACTCAGTGTTGCGGGGAATGCGACTATCATCGTCAGAGTTATAGCGTGCTTTCAACCGTTACGAGATTGCCAGGCGGAATATTTTCGTCAACTGCTTAAGCCTGTAACGTAGATGGGCAGTTGGCATTCTTAGCGTATCAACCAGTTTTTATTTTCAAGCTATCTTTATCTAAAAATACCGATCTTGCGGTGGAAAAGAATATGGATGGGCTAATGTGGTTACCATCATCCACATGGACCTTATGACAATTGTATATAGTAAAAGCAATTAATCAGCACACGCTGTGAACTCATATTCATTGTTGGTGATTTCCTCCTTTAGGTGGTTAATTGTGAAACGCCATTTGGTGAATGGATAAACAGAACAAGCCAGTGTTCTGTTTGAACCTGCCATGTCAGAGTTCAGAAAACGTGAGCTTGGATACAGCTATACTGCCATGGGTGCAGCTCGACAACTGGGATACACCTAATTTGACCAGTCCAAGGCCTCTAACACAGGCAACCAAGCTTGATGAGGTATTTAAATCAACTTCTGTAGGAAGCCCTTACCTTCTGAATTCTCAGATATTATCATCTGAGAGTGGTGGAGAGTCCAGCTCTGTTGCTGCTGCTACCCCATCCTGTGAAGAGTTTGAGGATGGGAAGGACGAAACTTCATATTATTTTCAAGAGTTTGAGTTTTTGGCCCCATTTGCAGAATTTAGAAGTTCTGTGATGGAAGGTAACTGTTCGTTGTCAAACGAACAAGATTTTGGGGCATGCAATGGTCTATTTAATGAGAAAATGAGGCTAGACTCATCTGAAACGTGTCAAAAAAGATTTATTATGTTCGATCAGACTGGAAGTAGGGGTAGAATTATATTCCACCCAAGTCAATTCTCGATGATGTTGCCGAATTCAACAATATCCAAGACACAGATAAATCCTAATAGTATGGTTTCAGAAGAAATAATGAAGTTGGAAGTGCCTGTTGAAGGCAAATATAGTGACTGGGAAACTCTTTCCCCTCCCTACAATGAGACCCTGCTTGTCTCGGCTTTTGCAGCTTTGCAAAAGGTGAGAGAAGATAGATTTAACTCTTTATCACCAGCCACTTTTGGTAATGAATTTATTCATTACTCTGCCGAGGGGGAAGAAAGCACAGGCAGGGTTAGCTATGATGGGGCAAGCCAAGCAAAAAGTGGGAGTTCTCATAGCCAGTTCCACGAAGACACCGAGGACTTGGAAGCCTTGCTATGTTCTGATGATGAAGAAAGTAGTACTGGGCACTCACCAAGTGAAGTAACTGGGAACAATGGACACTTGTCTATAGAAGAAGATAATAATGATGTAACCAGTGGCATGCCAGCCAAGAGGAGGAGAATTGACGTTATGGCAAATGGAGAACAGGCGGTTGACTACATGCCTGCATCTATCGAAGAATTTGATAACATATCCATGACAAATGAAAAATACCAGTCACCTGACATTTCTGTAGTTGACACTTCAAGCTGGGACATGGATAACCAACCCAAGTTTTCTGCTGACATCTATGATGATAACTATAGCCATAATCTCCCGTGTGGCTATAGTTGTCATGGTATCCACGGAGAATATAGTTCTAAAGGCAGTGGCGATGAACAGATGCAATCTGTGAAATGCCTTTTGGGACATTCAGGATCAGCCAAGAACTCAAGGAAAGGAAAGATAAAAAGAACTGTGAGGCTCTTGAAAAGTATAATTCCTGGGGGAGATTGCATGGACACCGCTATTGTTCTTGACGAGGCCATTCAGTATGTAAGGTTGCTCCAGCAAAAAGTAAAAAAGTTGGAATCTAATCAGAATTGAATAGTGAGTGGATTACAAAAGAGCTGCATAACTCTATAAACCAAGAAAACAATTACTAGTCCCTTCTGTTGTGTGTGTTGATATGTCTTTGAGTTTTTATTAGTATCTCCAGTTTGATCTGGACTGTTAGGGTTTGGTCAGTTCGTTTTTAATGTATTCAGTTATATAGGGTTTTCAATCTTAACTACTGTGAAGCGGCCGTCTTTGTGAATCCTTATGATGTGAACTTTCTTGTCGTTTTTAATGTATTCAGTTATATAGGGTTTTCAATCTTAACTATTGTGAAGCGGCCGTCTTTGTGAATCCTTATGATGTGAACTTTCTTCTTGTGTAAGCTTCTGTTTAATAACTAAATGTT

Ace file of the UniGene sp_v1.1_unigene6754

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor, putative	-	-	5.0e-12	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	50%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPI3

Fln msg:

Fln protein: MDKQNKPVFCLNLPCQSSENVSLDTAILPWVQLDNWDTPNLTSPRPLTQATKLDEVFKSTSVGSPYLLNSQILSSESGGESSSVAAATPSCEEFEDGKDETSYYFQEFEFLAPFAEFRSSVMEGNCSLSNEQDFGACNGLFNEKMRLDSSETCQKRFIMFDQTGSRGRIIFHPSQFSMMLPNSTISKTQINPNSMVSEEIMKLEVPVEGKYSDWETLSPPYNETLLVSAFAALQKVREDRFNSLSPATFGNEFIHYSAEGEESTGRVSYDGASQAKSGSSHSQFHEDTEDLEALLCSDDEESSTGHSPSEVTGNNGHLSIEEDNNDVTSGMPAKRRRIDVMANGEQAVDYMPASIEEFDNISMTNEKYQSPDISVVDTSSWDMDNQPKFSADIYDDNYSHNLPCGYSCHGIHGEYSSKGSGDEQMQSVKCLLGHSGSAKNSRKGKIKRTVRLLKSIIPGGDCMDTAIVLDEAIQYVRLLQQKVKKLESNQN*

Protein Length: 493

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTGCGGGGAATGCGACTATCATCGTCAGAGTTATAGCGTGCTTTCAACCGTTACGAGATTGCCAGGCGGAATATTTTCGTCAACTGCTTAAGCCTGTAACGTAGATGGGCAGTTGGCATTCTTAGCGTATCAACCAGTTTTTATTTTCAAGCTATCTTTATCTAAAAATACCGATCTTGCGGTGGAAAAGAATATGGATGGGCTAATGTGGTTACCATCATCCACATGGACCTTATGACAATTGTATATAGTAAAAGCAATTAATCAGCACACGCTGTGAACTCATATTCATTGTTGGTGATTTCCTCCTTTAGGTGGTTAATTGTGAAACGCCATTTGGTGA_-_ATGGATAAACAGAACAAGCCAGTGTTCTGTTTGAACCTGCCATGTCAGAGTTCAGAAAACGTGAGCTTGGATACAGCTATACTGCCATGGGTGCAGCTCGACAACTGGGATACACCTAATTTGACCAGTCCAAGGCCTCTAACACAGGCAACCAAGCTTGATGAGGTATTTAAATCAACTTCTGTAGGAAGCCCTTACCTTCTGAATTCTCAGATATTATCATCTGAGAGTGGTGGAGAGTCCAGCTCTGTTGCTGCTGCTACCCCATCCTGTGAAGAGTTTGAGGATGGGAAGGACGAAACTTCATATTATTTTCAAGAGTTTGAGTTTTTGGCCCCATTTGCAGAATTTAGAAGTTCTGTGATGGAAGGTAACTGTTCGTTGTCAAACGAACAAGATTTTGGGGCATGCAATGGTCTATTTAATGAGAAAATGAGGCTAGACTCATCTGAAACGTGTCAAAAAAGATTTATTATGTTCGATCAGACTGGAAGTAGGGGTAGAATTATATTCCACCCAAGTCAATTCTCGATGATGTTGCCGAATTCAACAATATCCAAGACACAGATAAATCCTAATAGTATGGTTTCAGAAGAAATAATGAAGTTGGAAGTGCCTGTTGAAGGCAAATATAGTGACTGGGAAACTCTTTCCCCTCCCTACAATGAGACCCTGCTTGTCTCGGCTTTTGCAGCTTTGCAAAAGGTGAGAGAAGATAGATTTAACTCTTTATCACCAGCCACTTTTGGTAATGAATTTATTCATTACTCTGCCGAGGGGGAAGAAAGCACAGGCAGGGTTAGCTATGATGGGGCAAGCCAAGCAAAAAGTGGGAGTTCTCATAGCCAGTTCCACGAAGACACCGAGGACTTGGAAGCCTTGCTATGTTCTGATGATGAAGAAAGTAGTACTGGGCACTCACCAAGTGAAGTAACTGGGAACAATGGACACTTGTCTATAGAAGAAGATAATAATGATGTAACCAGTGGCATGCCAGCCAAGAGGAGGAGAATTGACGTTATGGCAAATGGAGAACAGGCGGTTGACTACATGCCTGCATCTATCGAAGAATTTGATAACATATCCATGACAAATGAAAAATACCAGTCACCTGACATTTCTGTAGTTGACACTTCAAGCTGGGACATGGATAACCAACCCAAGTTTTCTGCTGACATCTATGATGATAACTATAGCCATAATCTCCCGTGTGGCTATAGTTGTCATGGTATCCACGGAGAATATAGTTCTAAAGGCAGTGGCGATGAACAGATGCAATCTGTGAAATGCCTTTTGGGACATTCAGGATCAGCCAAGAACTCAAGGAAAGGAAAGATAAAAAGAACTGTGAGGCTCTTGAAAAGTATAATTCCTGGGGGAGATTGCATGGACACCGCTATTGTTCTTGACGAGGCCATTCAGTATGTAAGGTTGCTCCAGCAAAAAGTAAAAAAGTTGGAATCTAATCAGAATTGA___ATAGTGAGTGGATTACAAAAGAGCTGCATAACTCTATAAACCAAGAAAACAATTACTAGTCCCTTCTGTTGTGTGTGTTGATATGTCTTTGAGTTTTTATTAGTATCTCCAGTTTGATCTGGACTGTTAGGGTTTGGTCAGTTCGTTTTTAATGTATTCAGTTATATAGGGTTTTCAATCTTAACTACTGTGAAGCGGCCGTCTTTGTGAATCCTTATGATGTGAACTTTCTTGTCGTTTTTAATGTATTCAGTTATATAGGGTTTTCAATCTTAACTATTGTGAAGCGGCCGTCTTTGTGAATCCTTATGATGTGAACTTTCTTCTTGTGTAAGCTTCTGTTTAATAACTAAATGTT

Fln Alignment:

sp_v1.1_unigene6754___MDKQNKPVFCLNLPCQSSENVSLDTAILPWVQLDNWDTPNLTSPRPLTQATKLDEVFKSTSVGSPYLLNSQILXXXXXXXXXXVAAATPSCEEFEDGKDETSYYFQEFEFLAPFAEFRSSVMEGNCSLSNEQDFGACNGLFNEKMR---------LDSSETCQKRFIMFDQTGSRGRIIFHPS---QFSMMLPNSTISKTQINPNSMVSEEIMKLEVPVEGKYSDWETLSPPYNETLLVSAFAALQKVREDRFNSLSPATFGNEFIHYSAEGEESTGRVSYDGASQAKSGSSHSQFHEDTEDLEALLCSDDEE-SSTGHSPSEVTGNNGHLSIEEDNNDVTSGMPAKRRRIDVMANGEQAVDYMPASIEEFDNISMTNEKYQSPDISVVDTSSWDMDNQPKFSADIYDDNYSHNLPCGYSCHGIHGEYSSKGSGDEQMQSVKCLLGHSGSAKNSRKGKIKRTVRLLKSIIPGGDCMDTAIVLDEAIQYVRLLQQKVKKLESNQN
B8LPI3______________MESPDIQVSCSNIPSPSLEHTGLESK-LPWTVQESCGLPILSGMEHLQQSGQHLGAFEVNAFQQRAHLRSE------QCVSASAYAAPPRCPEQLKSVDGNSHAHSA-NSAGLAAGFVTAITGDNASLLEKHDYGAWNGGNSQELKQVQLLDGLEVQYSEAFSKRFIIFDQTGSGVRVIVHPSLVYEFPNLLPDSAKGLDKINVHNRVPQKESISQIPSVYNSTDRGTGLLAYREHM-APAFTALQGIRKRRW--LSAEAAGNGFVACSKQ-EETGSQMSCNGSSR---GGYQSQSHEDTRDLEALLGSDEEEDDSTGHTPSEAI-TNDQQSGTQDEAHISNGIPTKKRRCECMEFGEQEVDFIPSAIQE---TAVLNGKCSSDGVCFPPVASQESGIQLECCNTVKDSDYRDEQFCDYSTDNMTGNGSSNNSGSK--------VGQPSSRRKLRKEKVKKAINLLRSIVPEGHSMDTAAVLEVASQHLKSLQLKLERLEANQN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
201	20		20		0.99255
306		20		80	0.995493
333		80		20	0.995493
612		33		66	0.997452
997			90	10	0.90298
1893	84		5		0.999846
1909	5	50	44		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain