SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6728

Length: 1243 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6728

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P283

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 176 - 314

Fln protein: RRDLGCHSKFCVIEVSL**PQ*SLFSQAPPVPKDRAPGEPFVPKSSKEAEMEKIMRSMSGMPGASNMKMYSKDDLMNMPNFGSNGEGEDDEEDEDDDYTSSRMRNIKKPVVSVESDWKKSLIDGVQSSFAHIKDQTQHAVIGAKRSLNRISNKIRKWYKGRKSGSKPSKSEKVEL*

Protein Length: 177

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTCTGCGTTATTGAAGTTTCTTTGTAATGACCTCAGTAAAGCTTGTTCAGTCAAGCACCCCCAGTTCCAAAGGATAGAGCACCAGGGGAGCCTTTTGTACCAAAGTCATCCAAAGAGGCTGAGATGGAAAAGATCATGAGATCTATGTCTGGCATGCCTGGAGCATCGAATATGAAAATGTACTCTAAGGATGACCTGATGAATATGCCAAATTTTGGGAGCAATGGGGAAGGTGAGGATGATGAGGAGGATGAAGATGATGATTACACTTCTTCTAGAATGAGAAACATTAAAAAACCTGTGGTGTCTGTGGAAAGTGATTGGAAGAAAAGTTTAATTGATGGAGTCCAATCCTCATTTGCTCATATAAAAGATCAAACTCAACATGCAGTTATTGGTGCAAAGCGGAGTCTTAACAGAATATCTAACAAAATAAGGAAGTGGTATAAAGGAAGGAAGTCTGGTTCCAAGCCTTCAAAATCCGAAAAGGTTGAGTTGTAA___CTTTTTGACTATGAAATATTTAATTTTTTATCTGGATAAAAAGATTGAACTTAGACTAGTTGTTATCCAATGTTTAGTAGATTGTTTTTCCCTCCTCCTTTTCCATTTGTGGGTATTCTGGTTAAAACAGAAGAGGAGAATGGCAATAAATTTTTCTGGCTTGGAAGGCACTTATAGAGACAGATAGTGAAGGGTTGAAGCCTTTTTACACAATTTCTTAATGGGGCACAACTCAGTGTGATATGAATAGACTAATTATTAGCATCAACTAATTTTTAATCTAGGATTCAATCCATTGATCTCTATGTATCCAATACTATTCTAGAGAGACTGGCCAGATTGGTTCTTCATCTCTTGATCTTTTCATATTCCCCTTGAGATATGACAAGTGGTTTTGATCGTGGATTTTTATCAAGCAGCAAGATGCCAATTAAAAGTTTTCTGAAGATGAGACTATCTGCATTAGATGGCCGAGTCTTATGTTAAAGCTTATCATGTCCCTGGATAAGTATTGATTTTCAATGGTGAAATTATGAAAATTGAAATGCAACTTATGGGAGCATCACATCCTAATATTTCTGTGATGGGACATACGAATCGATTCTATTGTTACTGGAGTACATCTGTTTGTTAGTGTTGGAAATTGTCACTAGTTGATCTCAGTCCTAAAGGACCTATTTATAAAAATGTTTTAGAATGTATCGCAATAATGTCA

Fln Alignment:

sp_v1.1_unigene6728___PPVPKDRAPGEPFVPKSSKEAEMEKIMRSMSGMPGASNMKMYSKDDLMNMPNFGSNXXXXXXXXXXXXXYTSSRMRNIKKPVVSVESDWKKSLIDGVQSSFAHIKDQTQHAVIGAKRSLNRISNKIRKWY
A9P283______________PPVPKDRTPGEPFVPKSSKEAEMEKIMRSMSGMPGASNMKMYSKDDLMNMPNFGSNGEDEDDEEDEDDDYTSSRMRNTKRPLVSVESDWKKSLLDRVQSTFSNVKDRTQHAVLGAKWSLDRISDKIRKWY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1052	53		46		1.0
1145	16			16	0.988813
1153	80			20	0.995493
1195		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain