SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6717

Length: 2114 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6717
CGTCGTGACCTTGGCTGTCACTCAATGTTTTGTATTTGAGCCAACTTTATAAAAGCAATCCCCATTTTTTTTCGCGATATACAAAAAATTAACTCTCTACAAACTAGACTCCAACGTTTATTACATAAACGGAGACTTTGTGAAAGCTTCAAGGCGCAGTAGCCACATTTTTCCCATAGTAGCCGGAGGTGTTTGATTCAATCCGTTCCGCGCTTAAGCTCGCGAAGCCGGCCAGATAACTGAAAACTTAAGGACATCGGCCTAAAACCCATCGTCAGCCATGGTTCTAGAGGCAACAATGATTTGCGTTGACAATTCTGAATGGATGAGAAACGGGGATTACCCTCCTACTCGCTTCCAGGCACAAGCTGATGCTATTAATCTTATTTGCGGGGCCAAAACTCAGTCGAATCCAGAGAATACAGTTGGTATCATGACTACAGCGGGAAAAGGTGTACGTGTCCTTGTGACTCCCACAAGTGATTTTGGAAAGATTCTTGCATCCATGCACGGTTTGGAAGTTGGTGGAGAAGTGAATTTAACATCTAGTGTTCAGATTGCACAGTTGGCTCTTAAACATCGTCAGAACAAAAAACAGCAGCAGCGTATCATAGTGTTTACTGGAAGTCCCGTCAAATCTGATAAAAAGATTCTTGAGGTGATTGGTAAGAAGTTGAAGAAAAATAATGTAGCGCTTGATATTGTGGACTTTGGAGAAGATGATGATGGGAAATCGGAGAAGCTGGATGCCCTTCTGGCATCTGTGAATAGTAATGAGAACAGTCATATTGTTCATGTGCCTGCGGGACCCAATGTTCTCACAGATGTCCTTATCAGCTCTGCTATCTTTACAGGAGATGGAGAAGCTGGAAGTGGATTTGCAGCTGCAGCCGCAGCTTCTGCAGCTGTTGCAGCAGCAGCTGCAGCCGGAGGTGCAGGAAACTTTGATTTTGATGTTGATCCTAATTTGGACCCAGAATTGGCTCTTGCTCTCCGTGTTTCAATGGAGGAAGAACGAGCAAGACAAGAAGCTGCCGCTCGAAGGGCTGCAGAGGAAACAACTGCTAAAGCTGCAAATGAGGGACATGAGCAGGGTGCAAGTTCCCATGACGTGACAGTGACAGAAATGACCACTGGCACAAAGGTTGAAACAGCAGAAAGAGGACCTGAGCCAATGGAGGATGAGGCAGCTTTGTTAGAGCAGGCTCTGGCAATGTCGATGAGTAGCTCTGGTACCTCTCAGTCTGCACCAGCTATGGCAGCTGACACAACTATGGCAGAAGCAAGACCAGAGGATCAACTTCAAGACTTGGCTTTTGCTCTTGAAATGTTGAAGGAAACGCCTGGAAAGAGTTCAGGAGCTGCAGACATGAGCAAAGTCTTGGGTGACCAAAATTTTGTGTCATCTGTTTTATCTTCGCTTCCAGGTGTGGATCCAAATGATCAATCGGTTAAAGATCTGCTGGCATCATTGAAAGAGAATGAGAAGGAGAATGAAAAGGGGCCGGAGAAACCCAAGGAAGGAGAACAGTGAGTCTCAGATTCATTACCAAATATACATGTATCCACTCCACAGTGAGTGAAGTTTAGGATTTGGCAGGAAACAGGTTCAAAACCTGTGGAAGAGTGGGAACGGAGACCAGACATTGTCGAAGCAGATTTATATTCAGTGACAGATGCTTCTTAAATTTTATTACTTGCAACAACTTGATTACTTATTGTGTAAGTGCAGACATCGAGCATGTTGGTGTCTGGTAAGCAATATTAATTTACAAAGTTTATCCACATGTTTGTTGTAGCTTGAATGTCAAACCCTCTGTTCAGTTAGATCCCTGCAAATTGAATCAAAGACAATTTCAATGATTACCAAAGCAGTGCAACTTTGAACAACAGATCATACACCTAGTTCTGAATTTCACTGTGATACTTTAGTCTAATAGATTCCCTGTGTTGTATTTGTAATTCATTATTTTTCTGAACATCAGGTCTAATGATATATTTCCTTTCATTTGTTTAATGTCACTGCATGCAATATATGCGGAACTACTGAATTGTATGATTGCATTTGATGGAAAGCTAGGCAGGCTAGTGCAGAGGCCATTAATTCTTTTTGG

Ace file of the UniGene sp_v1.1_unigene6717

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome non-atpase regulatory subunit, putative; K03029 26S proteasome regulatory subunit N10	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	75%

Source	InterPros	Term	Type	Identity
Blast2go	von Willebrand factor, type A	IPR002035	-	75%
Blast2go	Ubiquitin interacting motif	IPR003903	-	75%
Blast2go	Ssl1-like	IPR007198	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSJ8

Fln msg:

Fln protein: MVLEATMICVDNSEWMRNGDYPPTRFQAQADAINLICGAKTQSNPENTVGIMTTAGKGVRVLVTPTSDFGKILASMHGLEVGGEVNLTSSVQIAQLALKHRQNKKQQQRIIVFTGSPVKSDKKILEVIGKKLKKNNVALDIVDFGEDDDGKSEKLDALLASVNSNENSHIVHVPAGPNVLTDVLISSAIFTGDGEAGSGFAAAAAASAAVAAAAAAGGAGNFDFDVDPNLDPELALALRVSMEEERARQEAAARRAAEETTAKAANEGHEQGASSHDVTVTEMTTGTKVETAERGPEPMEDEAALLEQALAMSMSSSGTSQSAPAMAADTTMAEARPEDQLQDLAFALEMLKETPGKSSGAADMSKVLGDQNFVSSVLSSLPGVDPNDQSVKDLLASLKENEKENEKGPEKPKEGEQ*

Protein Length: 419

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTTTGTATTTGAGCCAACTTTATAAAAGCAATCCCCATTTTTTTTCGCGATATACAAAAAATTAACTCTCTACAAACTAGACTCCAACGTTTATTACATAAACGGAGACTTTGTGAAAGCTTCAAGGCGCAGTAGCCACATTTTTCCCATAGTAGCCGGAGGTGTTTGATTCAATCCGTTCCGCGCTTAAGCTCGCGAAGCCGGCCAGATAACTGAAAACTTAAGGACATCGGCCTAAAACCCATCGTCAGCC_-_ATGGTTCTAGAGGCAACAATGATTTGCGTTGACAATTCTGAATGGATGAGAAACGGGGATTACCCTCCTACTCGCTTCCAGGCACAAGCTGATGCTATTAATCTTATTTGCGGGGCCAAAACTCAGTCGAATCCAGAGAATACAGTTGGTATCATGACTACAGCGGGAAAAGGTGTACGTGTCCTTGTGACTCCCACAAGTGATTTTGGAAAGATTCTTGCATCCATGCACGGTTTGGAAGTTGGTGGAGAAGTGAATTTAACATCTAGTGTTCAGATTGCACAGTTGGCTCTTAAACATCGTCAGAACAAAAAACAGCAGCAGCGTATCATAGTGTTTACTGGAAGTCCCGTCAAATCTGATAAAAAGATTCTTGAGGTGATTGGTAAGAAGTTGAAGAAAAATAATGTAGCGCTTGATATTGTGGACTTTGGAGAAGATGATGATGGGAAATCGGAGAAGCTGGATGCCCTTCTGGCATCTGTGAATAGTAATGAGAACAGTCATATTGTTCATGTGCCTGCGGGACCCAATGTTCTCACAGATGTCCTTATCAGCTCTGCTATCTTTACAGGAGATGGAGAAGCTGGAAGTGGATTTGCAGCTGCAGCCGCAGCTTCTGCAGCTGTTGCAGCAGCAGCTGCAGCCGGAGGTGCAGGAAACTTTGATTTTGATGTTGATCCTAATTTGGACCCAGAATTGGCTCTTGCTCTCCGTGTTTCAATGGAGGAAGAACGAGCAAGACAAGAAGCTGCCGCTCGAAGGGCTGCAGAGGAAACAACTGCTAAAGCTGCAAATGAGGGACATGAGCAGGGTGCAAGTTCCCATGACGTGACAGTGACAGAAATGACCACTGGCACAAAGGTTGAAACAGCAGAAAGAGGACCTGAGCCAATGGAGGATGAGGCAGCTTTGTTAGAGCAGGCTCTGGCAATGTCGATGAGTAGCTCTGGTACCTCTCAGTCTGCACCAGCTATGGCAGCTGACACAACTATGGCAGAAGCAAGACCAGAGGATCAACTTCAAGACTTGGCTTTTGCTCTTGAAATGTTGAAGGAAACGCCTGGAAAGAGTTCAGGAGCTGCAGACATGAGCAAAGTCTTGGGTGACCAAAATTTTGTGTCATCTGTTTTATCTTCGCTTCCAGGTGTGGATCCAAATGATCAATCGGTTAAAGATCTGCTGGCATCATTGAAAGAGAATGAGAAGGAGAATGAAAAGGGGCCGGAGAAACCCAAGGAAGGAGAACAGTGA___GTCTCAGATTCATTACCAAATATACATGTATCCACTCCACAGTGAGTGAAGTTTAGGATTTGGCAGGAAACAGGTTCAAAACCTGTGGAAGAGTGGGAACGGAGACCAGACATTGTCGAAGCAGATTTATATTCAGTGACAGATGCTTCTTAAATTTTATTACTTGCAACAACTTGATTACTTATTGTGTAAGTGCAGACATCGAGCATGTTGGTGTCTGGTAAGCAATATTAATTTACAAAGTTTATCCACATGTTTGTTGTAGCTTGAATGTCAAACCCTCTGTTCAGTTAGATCCCTGCAAATTGAATCAAAGACAATTTCAATGATTACCAAAGCAGTGCAACTTTGAACAACAGATCATACACCTAGTTCTGAATTTCACTGTGATACTTTAGTCTAATAGATTCCCTGTGTTGTATTTGTAATTCATTATTTTTCTGAACATCAGGTCTAATGATATATTTCCTTTCATTTGTTTAATGTCACTGCATGCAATATATGCGGAACTACTGAATTGTATGATTGCATTTGATGGAAAGCTAGGCAGGCTAGTGCAGAGGCCATTAATTCTTTTTGG

Fln Alignment:

sp_v1.1_unigene6717___MVLEATMICVDNSEWMRNGDYPPTRFQAQADAINLICGAKTQSNPENTVGIMTTAGKGVRVLVTPTSDFGKILASMHGLEVGGEVNLTSSVQIAQLALKHRQNKKQQQRIIVFTGSPVKSDKKILEVIGKKLKKNNVALDIVDFGEDDDGKSEKLDALLASVNSNENSHIVHVPAGPNVLTDVLISSAIFTGDGEXXXXXXXXXXXXXXXXXXXXXXXXXNFDFDVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXGHEQGASSHDVTVTEMTTGTKVETAERGPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADTTMAEARPEDQLQDLAFALEMLKETPGKSSGAADMSKVLGDQNFVSSVLSSLPGVDPNDQSVKDLLASL
C0PSJ8______________MVLEATMICIDNSEWMRNGDYSPTRFQAQAEAINLICGAKTQSNPENTVGIMTTAGKGVRVLVTPTSDFGKILASMHGLEVGGEMNLTSSVQIAQLALKHRQNKKQQQRIIMFTGSPVKSDKKILEVIGKKLKKNNVALDIVDFGEDDDGKSEKLDALLASVNSNENSHIVHVPAGPNVLTDVLISSAIFTGDGEAGSGFAAAAAASAAVAAAAAAGGAGSFDFGVDPNLDPELALALRVSMEEERARQEAAARRAAEEATAKAANEGDEQGASSHDVAMEEMTTGTMVETAQRGPDPMEDEAALLEQALAMSMSSSETSQSAPAMEADTTMAEAKPEDQLQDLAFALEMLKQTPGKSSGPTDMSKVLGDQNFVSSVLSSLPGVDPNDPSVKDLLASL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1003		25		75	0.996473
1120	87		12		0.992554
1531	85		14		0.993533
1532		85	14		0.993533
1533	85		14		0.993533
1588	10		90		0.90298
1590			10	90	0.90298
1591			10	90	0.90298
1592	90		10		0.90298
1622	10		90		0.90298
1657	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain