SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6713

Length: 2783 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6713
CGTCGTGACCTTGGCTGTCACTCAATGGGGCTTCTGCGGGATTGGGGCAATGAAAGAGATAATTGCTGCTACGACAACGACGATCATGTTCTCACAGTAAAGGAAATGCCTAAAACCCCCCAGCCTTTGCACTGGCGGTCACGATCAGCGCAAAGCTCAGAGCAGAGGCGAGCTGGATTGGACGCCATGGCTGGAAAGAGAAGGGCTGTTAAGCCCGCTCGGGAAAATACTGTGAAGCTCGAAGGTAAACGGAAGGAAGATAATGCTTGGTATGAATGCGAGGTCTCATTGAGTTCTTCTGATTCGTCATGCACATCTCTCTATGTGCATTATGCAAGCTTCAAGGGAGATGAAAATGACATTATAGTACAAAAAGATGAAGCCTTTGCACGTCTTCGTGTGCGCTCCAGAGAACTCTCAAAAGGTGAATGCCTTGATGTCAAAGAGGGGGAGGCGATTATTGCTTTACAAAAAACTCAGTCAGGCAGGACCTGCTTATTCGATGCAGTGGTGGAAAAGGCCATGAGGTTGAAGCATTCCAACAAGGTGGTCTGCAGGTGCACTTTCGAAATCAGGTGGCTTGAAAGTGAAATGAAAGGAAATGCAGTGACAGTACCTGCAAGCTCAATTAGAAGATTGGCCGAAGAAAGCATCCAGACTCATCCAACTATTTCTTCTTTTCTAGAAAAGGTGCAATCAGCAGCTGGACCACCTCTGTCACCTGAATTTCTAGGATCTCTTCCCGAAGACAGCGATATTGAGATTTATATGCATGCTCGGATTGAGCAACAAATTGAAGAAATTGCCAAATTGGCCGAGACAAGTGAAAATGCTGCAACTGAAGAGATACCCTTCAAACATATAAAGGTTAATGCTACATACACTCACAGGAAGGTCACTGCGTCTGCTGAACACAGTTTTTTAGGCAAAGATGGGAATGAAGATGTCCCTGTTCGCAAATCTTCTAGGAAGAGAAATACAATAAACTCAGTAGCAGTTTCAAAAGAACCCGTCACTTTAAATGCTGCTGCTTTATTGCAATTAGAAAAGAGACCTCGCCTAAGCCCTCTTGCAGCACGTGCAGCCTTAGCTGCTTCTGTTTGGGATTTTGCTTTTGAAGAACACAATAATAATGCTGTCAGTGATGTTTTTGTGGCAAAGAAAAAGGATTCCGTTAATCCAATAGCCCGACGTAAGTCTAAGAATCCACATGACAAAGTTCCTCTGGACCTCTCTGATACCTATTTCGAGAAAGAACCTCATTCTAAAAATAAGAAAGTTCCTAAGAGTACTGGATCTACTGTTCGAAGCAAGCCACCAAAACAGTCTAGTAGCAACAAATTTTGTGCAAATCAAGTTGAGCATGGCCATGCAAACATGAAATCCTCAGAAACTATTTCCTCAAAGTATCCAAAGCAGAAAAAACACATTCAGTTTCTGTATCAGCAAAGCAAGAAACTTCATCTGCCTGTACCACAAAAGGATCATCTGCAACAGCAGATGAAAACGCCTTGTTAACTAAACAAAGGGTAAAAAAGAGGCAGAGAGAGGCCAACAAGGATGTAAGTTCCATGAGATCAAAAGAGAAGAACTCAGGTCTTGGTCCAACTCGCTCCTCTCCCCGGTTTCATGTGGTTTCCAGTTGCGATAATCAGCAACCGCTTGGAAGTTTGCAGAGTGTGGAGATTGAGAAGAATGAAGAGAATAATGGAACTTGTGTGGCAAATACAGTCACGGGAAGGATTTCCAGAAAGGGAAAAAAGCAACCTCAAACTACAGAAGAGGAACCAGAATGTACTGTTGTGTTAACAAATCCTCTGCAGGAGAAAAATTTGTTAAATGATACTACTACCAATGAACATCATCTCAAAGAAGCCAAGGAAGGGCCAGAAGAGAATGGCTTTAACGGTACCAAAAATCATTCCAAAGTAGCATCGATCAGGCCAAACAAGAATAAACATTTATTGAATGATGACTCTCAAAATATTACTGAACCAACTGTAGAGGGCCTAAAAGATCATGGCTTTAACAATGAAAAGCTTGCTTCAGATAACATATCATTGGATGGAAAAAGAATAAAAAGGCCAAAGATCATGGGTCCTAACCATGTGGAATCCTCATCTATAGCAAATGATGCCCGTACTTCATTAGAAACACTTGATGGAAGCTTGCACAGTAAAAGGACTTCGAAAGCGGCCACATCAAAAGCAAAGTTGACAAAGAAAAGTAGAAGTCCAATCCATCTGGAAGAATCTAATGGAGGATATAAAACAAAATGTCAGTCCCCTGACACGAAAATGATCCACTCCCAAAAAGGTGAAGATTCAAGAAAAGACAGCGTTATTGCTGATAACAACCTGAAAGCACAAGCACGGGATAGCTTTGAAAAACAGAAGCAGGCATCTAAAACTATTGTAGTGCGATCATCACCCCGTCTTAGGTCACTACAGTGAACTTGTTCCTAGAACTAGTGGCATTTGGGACATGAGGAAGTGACTCAGCTACACAGGAGGAGAACATGTTCAGGCTTTAAAAAAATTGCTTCAGTGAGTCATATTATATACAAGATCATCTTCAGTTTGATGTCTATTTTGATGTGTAGTTACTCTTGAAGCCATGATAATATTTTAATCAGCACATTGTTTATGCTGACGATTATGTAGGCAGGTTTGCTTTGCAGGCAAAGCAAAAGGCAAAGCTGCAAGAGCATTATCACTAAATAGTGTGCTGATCTAATCTTCTGTAAGAGCAGAACAGTTTCTTTGAGTAATCTTCATTTTGCC

Ace file of the UniGene sp_v1.1_unigene6713

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	42%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	3.3415e-35	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6HLD9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 140 aas, putative chimeric sequence, No stop codon before M and low homology subject, your sequence is shorter than subject: 498 - 570

Fln protein: MGLLRDWGNERDNCCYDNDDHVLTVKEMPKTPQPLHWRSRSAQSSEQRRAGLDAMAGKRRAVKPARENTVKLEGKRKEDNAWYECEVSLSSSDSSCTSLYVHYASFKGDENDIIVQKDEAFARLRVRSRELSKGECLDVKEGEAIIALQKTQSGRTCLFDAVVEKAMRLKHSNKVVCRCTFEIRWLESEMKGNAVTVPASSIRRLAEESIQTHPTISSFLEKVQSAAGPPLSPEFLGSLPEDSDIEIYMHARIEQQIEEIAKLAETSENAATEEIPFKHIKVNATYTHRKVTASAEHSFLGKDGNEDVPVRKSSRKRNTINSVAVSKEPVTLNAAALLQLEKRPRLSPLAARAALAASVWDFAFEEHNNNAVSDVFVAKKKDSVNPIARRKSKNPHDKVPLDLSDTYFEKEPHSKNKKVPKSTGSTVRSKPPKQSSSNKFCANQVEHGHANMKSSETISSKYPKQKKHIQFLYQQSKKLHLPVPQKDHLQQQMKTPC*

Protein Length: 499

Fln nts: CGTCGTGACCTTGGCTGTCACTCA_-_ATGGGGCTTCTGCGGGATTGGGGCAATGAAAGAGATAATTGCTGCTACGACAACGACGATCATGTTCTCACAGTAAAGGAAATGCCTAAAACCCCCCAGCCTTTGCACTGGCGGTCACGATCAGCGCAAAGCTCAGAGCAGAGGCGAGCTGGATTGGACGCCATGGCTGGAAAGAGAAGGGCTGTTAAGCCCGCTCGGGAAAATACTGTGAAGCTCGAAGGTAAACGGAAGGAAGATAATGCTTGGTATGAATGCGAGGTCTCATTGAGTTCTTCTGATTCGTCATGCACATCTCTCTATGTGCATTATGCAAGCTTCAAGGGAGATGAAAATGACATTATAGTACAAAAAGATGAAGCCTTTGCACGTCTTCGTGTGCGCTCCAGAGAACTCTCAAAAGGTGAATGCCTTGATGTCAAAGAGGGGGAGGCGATTATTGCTTTACAAAAAACTCAGTCAGGCAGGACCTGCTTATTCGATGCAGTGGTGGAAAAGGCCATGAGGTTGAAGCATTCCAACAAGGTGGTCTGCAGGTGCACTTTCGAAATCAGGTGGCTTGAAAGTGAAATGAAAGGAAATGCAGTGACAGTACCTGCAAGCTCAATTAGAAGATTGGCCGAAGAAAGCATCCAGACTCATCCAACTATTTCTTCTTTTCTAGAAAAGGTGCAATCAGCAGCTGGACCACCTCTGTCACCTGAATTTCTAGGATCTCTTCCCGAAGACAGCGATATTGAGATTTATATGCATGCTCGGATTGAGCAACAAATTGAAGAAATTGCCAAATTGGCCGAGACAAGTGAAAATGCTGCAACTGAAGAGATACCCTTCAAACATATAAAGGTTAATGCTACATACACTCACAGGAAGGTCACTGCGTCTGCTGAACACAGTTTTTTAGGCAAAGATGGGAATGAAGATGTCCCTGTTCGCAAATCTTCTAGGAAGAGAAATACAATAAACTCAGTAGCAGTTTCAAAAGAACCCGTCACTTTAAATGCTGCTGCTTTATTGCAATTAGAAAAGAGACCTCGCCTAAGCCCTCTTGCAGCACGTGCAGCCTTAGCTGCTTCTGTTTGGGATTTTGCTTTTGAAGAACACAATAATAATGCTGTCAGTGATGTTTTTGTGGCAAAGAAAAAGGATTCCGTTAATCCAATAGCCCGACGTAAGTCTAAGAATCCACATGACAAAGTTCCTCTGGACCTCTCTGATACCTATTTCGAGAAAGAACCTCATTCTAAAAATAAGAAAGTTCCTAAGAGTACTGGATCTACTGTTCGAAGCAAGCCACCAAAACAGTCTAGTAGCAACAAATTTTGTGCAAATCAAGTTGAGCATGGCCATGCAAACATGAAATCCTCAGAAACTATTTCCTCAAAGTATCCAAAGCAGAAAAAACACATTCAGTTTCTGTATCAGCAAAGCAAGAAACTTCATCTGCCTGTACCACAAAAGGATCATCTGCAACAGCAGATGAAAACGCCTTGTTAACTAAACAAAGGGTAAAAAAGAGGCAGAGAGAGGCCAACAAGGATGTAAGTTCCATGAGATCAAAAGAGAAGAACTCAGGTCTTGGTCCAACTCGCTCCTCTCCCCGGTTTCATGTGGTTTCCAGTTGCGATAATCAGCAACCGCTTGGAAGTTTGCAGAGTGTGGAGATTGAGAAGAATGAAGAGAATAATGGAACTTGTGTGGCAAATACAGTCACGGGAAGGATTTCCAGAAAGGGAAAAAAGCAACCTCAAACTACAGAAGAGGAACCAGAATGTACTGTTGTGTTAACAAATCCTCTGCAGGAGAAAAATTTGTTAAATGATACTACTACCAATGAACATCATCTCAAAGAAGCCAAGGAAGGGCCAGAAGAGAATGGCTTTAACGGTACCAAAAATCATTCCAAAGTAGCATCGATCAGGCCAAACAAGAATAAACATTTATTGAATGATGACTCTCAAAATATTACTGAACCAACTGTAGAGGGCCTAAAAGATCATGGCTTTAACAATGAAAAGCTTGCTTCAGATAACATATCATTGGATGGAAAAAGAATAAAAAGGCCAAAGATCATGGGTCCTAACCATGTGGAATCCTCATCTATAGCAAATGATGCCCGTACTTCATTAGAAACACTTGATGGAAGCTTGCACAGTAAAAGGACTTCGAAAGCGGCCACATCAAAAGCAAAGTTGACAAAGAAAAGTAGAAGTCCAATCCATCTGGAAGAATCTAATGGAGGATATAAAACAAAATGTCAGTCCCCTGACACGAAAATGATCCACTCCCAAAAAGGTGAAGATTCAAGAAAAGACAGCGTTATTGCTGATAACAACCTGAAAGCACAAGCACGGGATAGCTTTGAAAAACAGAAGCAGGCATCTAAAACTATTGTAGTGCGATCATCACCCCGTCTTAGGTCACTACAGTGAACTTGTTCCTAGAACTAGTGGCATTTGGGACATGAGGAAGTGACTCAGCTACACAGGAGGAGAACATGTTCAGGCTTTAAAAAAATTGCTTCAGTGAGTCATATTATATACAAGATCATCTTCAGTTTGATGTCTATTTTGATGTGTAGTTACTCTTGAAGCCATGATAATATTTTAATCAGCACATTGTTTATGCTGACGATTATGTAGGCAGGTTTGCTTTGCAGGCAAAGCAAAAGGCAAAGCTGCAAGAGCATTATCACTAAATAGTGTGCTGATCTAATCTTCTGTAAGAGCAGAACAGTTTCTTTGAGTAATCTTCATTTTGCC

Fln Alignment:

sp_v1.1_unigene6713___TVKLEGKRKEDNAWYECEVXXXXXXXXXXXLYVHYASFKGDENDIIVQKDEAFARLRVRSRELSKGECLDVKEGEAIIALQKTQSGRTCLFDAVVEKAMRLKHSNKVVCRCTFEIRWLESEMKGNAVTVPASSIRRLAEESIQTHPTISSFLEKVQS---AAGPPLSPEFLGSLPEDSDIEIYMHARIEQQIEEIAKLAETSENAATEEIPF
F6HLD9______________TVELEAMRKDDSSWHPCRVSLSSTGFG---LIVDFGS--QDLEDIISNEEEALARLRIRSVPLQGEDCSLIEEGERVLATHKSHF-KTLSFDAMVEKALRVRHSTRISCRCTFVIKWLHQDLKGATSIVPSSSIMKLATQSITVHPMVAAFLKPIKTLNCSAAPSFSTVF-----EDVDCEVDLHKLLEKQIEEISNLADASKKEISEDILF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
606		81	18		0.999994
784		14		85	0.993533
810	87			12	0.992554
811	87		12		0.992554
812	14		14		0.984337
813			14	85	0.993533
863		14		85	0.993533
880		83		16	0.994512
1176	44		55		1.0
1189		77		22	0.999999
1723		11		88	0.923564
1961	87		12		0.999964
2525			11	88	0.999937
2605	13		86		0.999973
2768	25			75	0.996473
2769	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain