SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6666

Length: 1210 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6666

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	7.0e-13	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	24%
Blast2go	protein	-	-	0.0	78%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	78%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	78%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	78%
Blast2go	WD40-repeat-containing domain	IPR017986	-	78%
Blast2go	WD40 repeat, conserved site	IPR019775	-	78%
Blast2go	WD40 repeat, subgroup	IPR019781	-	78%
Blast2go	WD40 repeat 2	IPR019782	-	78%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPU3

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 79 aas, putative chimeric sequence, your sequence is shorter than subject: 263 - 399

Fln protein: ANQQSKYPCLN*NGRRTKCMTKRES*LYGGTSATYGSADGSTIIASCSEGTDIKLWQGENGKFLGATDTNQLKNNMAVLSPNGRFVAAAAFTADVKVWEIVYGKDGSVKEVMRVMQLKGHKSAVTWLCFTSDSERILTASKDGSMRIWNINVRYHLDEDPKCLKVFPIPLQNEKGLVLHYDRMALSPDDKVIAVTHGSMLQWLSFETGEILDTADKAHDGDITCMAWAPQPLATENGLATILATASNDKKVKFWTAPKFPLH*

Protein Length: 264

Fln nts: GCAAATCAGCAATCCAAATACCCCTGCCTGAACTGAAATGGGAGAAGGACCAAGTGCATGACAAAAAGGGAATCTTAACTCTATGGGGGCACTTCTGCAACATATGGCAGTGCTGATGGCAGTACGATCATTGCTTCATGCTCTGAAGGTACAGACATCAAACTTTGGCAAGGAGAGAATGGAAAATTCTTGGGAGCTACAGACACAAATCAGTTGAAAAATAACATGGCTGTTCTTTCACCAAATGGGCGCTTTGTGGCTGCTGCAGCTTTTACGGCAGATGTGAAGGTGTGGGAAATCGTTTATGGGAAGGATGGCTCAGTCAAAGAGGTTATGAGGGTTATGCAGCTTAAAGGTCACAAGAGTGCAGTGACATGGCTTTGCTTCACATCAGATTCAGAAAGGATTCTGACTGCATCAAAGGATGGTTCAATGAGAATATGGAACATTAATGTTCGATACCATCTTGATGAAGATCCCAAGTGTTTGAAGGTGTTTCCAATACCGTTGCAAAATGAAAAGGGTTTAGTGCTGCATTATGACCGAATGGCCCTCTCACCAGATGATAAGGTCATTGCCGTGACACATGGTTCTATGTTACAATGGTTAAGTTTTGAGACTGGAGAAATTCTTGATACAGCAGATAAAGCTCATGACGGGGATATCACATGTATGGCTTGGGCACCTCAGCCTCTTGCAACAGAAAATGGTCTCGCAACAATTTTAGCTACAGCCAGCAATGACAAAAAAGTGAAGTTTTGGACTGCCCCTAAATTTCCTTTACATTGA___AATTGGTCCGTGTTTTACTAACAGCCATTGCTCAGGTCCTTGTATATTCGGTCACTCATCACCAATTTGTATCGCGTGAATGATATGAGAGATGTTCATTAACGAGTTTTACTGAGAAGCATATGCATTTACAGCATGAAAGATACGGTTATCAAATCAATTTTAGGAAATTGTTGGAAGAGGGTTTTTTATGGATATAATTAAGAATAGACATTTCTCATGAGATGTAATAGTGCTTAGCATGCACTATTTGCCGCTCTAAGAATAAGAATTTTGTGATAGTTTTCAACACATACTCTCATCTTCCTTCTTTTTAGCATGCGATACGTGGATACAATTTTGTTAGTATTATTTTTACCTTTTTCTATCAAACCAAAATGCTTTATGTGCCAGTGTTAATGGACAGAAAAAGTTTAAGTTT

Fln Alignment:

sp_v1.1_unigene6666___SADGSTIIASCSEGTDIKLWQGENGKFLGATDTNQLKNNMAVLSPNGRFVAAAAFTADVKVWEIVYGKDGSVKEVMRVMQLKGHKSAVTWLCFTSDSERILTASKDGSMRIWNINVRYHLDEDPKCLKVFPIPLQNEKGLVLHYDRMALSPDDKVIAVTHGSMLQWLSFETGEILDTADKAHDGDITCMAWAPQPLATENGLATILATASNDKKVKFW
B8LPU3______________SNDGLLLASGGLDGV-VRIWDASTGNLIHVLDGPGGGIEWVRWHPKGQLVLAGSEDYTTWMWNADLGKCLSV--------YTGHSESVTCGDFTPDGKTICTGSADGSLRVWNPQTQ----ESKLTVKGHPYHTEGLTCLNISSDSTLV-----VSGSTEGS-VHVVNIKNGKVVGSL-VGHSGSIECVGFSPS--------LTWVATGGMDKKLMIW

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
253			16	83	0.994512
255		16		83	0.994512
259	16		83		0.994512
268		16	83		0.994512
276	16		83		0.994512
301	16		83		0.994512
334	83	16			0.994512
366		16		83	0.994512
369	83		16		0.994512
371		16		83	0.994512
372		16	83		0.994512
670		20		80	0.995493
828		24	75		1.0
830		75		24	1.0
835		75		24	1.0
836	24	75			1.0
1047		44	55		1.0
1048			44	55	1.0
1051		43	56		1.0
1056	52		44		1.0
1114		36		63	1.0
1162		42	57		1.0
1167		50	50		1.0
1178	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain