SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6647

Length: 1343 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6647 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PHF1; PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1); nucleotide binding	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	sec12-like protein 1	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	phosphate ion transport	GO:0006817	Biological Process	68%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	68%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	68%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	68%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	68%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	68%
Blast2go	WD40-repeat-containing domain	IPR017986	-	68%
Blast2go	WD40 repeat, subgroup	IPR019781	-	68%
Blast2go	WD40 repeat 2	IPR019782	-	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9U5

Fln msg: your sequence is shorter than subject: 310 - 407

Fln protein: MGDGVILSFSKGCKFFELEGNSKLKVSDIVLSPMQDIGPQKCLAFSADGSKLATGGEDGHLRIFEWPSLQVLLDQPKAHSSFKDLDFSLDSAFLASTSNDGPARVWDIIKAAPLATLTRDQGESIDFCRFSRDGTKPFLFCTVTKGGKSRIAVWDITTWRKLGGKKFLDNPISAFGISRNGKFLSIGSTKGDISIIDVRQMQVQHSIKRAHPGAVITSIEFASNGRALLSVSPEWAARVNPIPCERDWKDWEIYLLLLTMVLISVILFYIFFEHSDSFWNFPLGREQPAKPPIEAILGDPVSSDDQNIW*

Protein Length: 311

Fln nts: ATGGGAGATGGGGTCATATTATCTTTCTCCAAGGGCTGCAAGTTTTTTGAATTGGAAGGAAATTCAAAACTGAAGGTATCGGATATAGTTTTGTCTCCTATGCAAGACATAGGACCTCAAAAGTGCCTTGCATTTAGTGCTGATGGATCTAAGCTTGCTACTGGAGGAGAGGATGGACACCTTCGCATCTTTGAATGGCCAAGCTTGCAAGTTTTACTGGATCAACCAAAAGCCCACAGTTCATTTAAAGACTTAGATTTCAGCCTGGATTCGGCCTTTCTTGCTTCAACATCAAATGATGGCCCTGCAAGAGTATGGGACATCATAAAGGCTGCACCATTAGCTACTTTAACACGTGATCAGGGTGAGAGCATTGACTTTTGTAGATTTTCTCGAGATGGAACCAAGCCATTCCTTTTCTGCACTGTAACAAAAGGTGGGAAATCAAGAATTGCAGTCTGGGACATTACTACATGGAGAAAGTTAGGAGGGAAGAAGTTTCTGGACAATCCGATCTCTGCATTTGGCATCAGTCGGAATGGAAAATTCCTTTCTATAGGAAGCACCAAGGGAGATATCTCTATAATTGATGTGCGACAAATGCAAGTGCAGCATTCTATTAAAAGAGCTCACCCTGGTGCGGTTATCACATCAATAGAATTTGCCTCCAATGGAAGAGCTTTACTGTCAGTATCACCTGAATGGGCTGCAAGAGTTAATCCAATTCCTTGCGAAAGAGATTGGAAAGATTGGGAGATATATCTGTTACTGCTCACAATGGTCTTAATTTCTGTCATTTTGTTCTACATATTTTTTGAGCATTCGGATTCATTTTGGAATTTTCCTCTGGGAAGGGAACAGCCTGCAAAGCCTCCAATTGAAGCAATTCTCGGTGATCCCGTTTCTTCTGATGATCAGAATATCTGGTGA___AAGAGGGTGGCACCCGAAACTCTCCCTGGATTCAGTCTGTGACCTCAAATTTATGTTGTGTACGTTTAAAGGGAGGAATTGTACATTTTGAATAGCTTGACGTGGTGTTCTGAAGTTTCAGTAGGAGTGTTGTCAATGTTGAAGAGCTTACAGATGATTTATTTAGTTGTGTTGGTTTTCGGCTTCATGCTTGGTCTTGTTTGTCAATAAAATTCTTCCTTTTAGTGCCTACACAAAGAAGAGGGTGGAAGTTATTCAATTGAAACCATAGAAGTCAAGCCCAATTGCCATCTGACTTTTTGTCAATAAATGCTAATTTTCTGAGGAGCACTCTTGTTGATCAATTCTGTTCCAAAATGGTGAGTAGATATCTGCTGCATAATTGATTCACAGATTTTATAATGTAACGTATC

Fln Alignment:

sp_v1.1_unigene6647___GDGVILSFSKGCKFFELE-GNSKLKVSDIVLSPMQDIGPQKCLAFSADGSKLATGGEDGHLRIFEWPSLQVLLDQPKAHXXXXXXXXXXXXXXXXSTSNDGPARVWDIIKAAPLATLTRDQGESIDFCRFSRDGTKPFLFCTVTKGGKSRIAVWDITTWRKLGGKKFLDNPISAFGISRNGKFLSIGSTKGDISIIDVRQMQVQHSIKRAHPGAVITSIEFASNGRALLSVSPEWAARVNPIPCERDWKDWEIYLLLLTMVLISVILFYIFFEHSDSFWNFPLGREQPAKPPIEAILGDPVSSDDQNIW
D5A9U5______________GDGVILSFSQGCKFFELDSGKSKLKVSDIVLSSMQDIGPQKCLAFSADGSKFAAGGEDGHLRIFEWPSLQVLLDQPKAHSSFKDLDFSLDSAFLASTSNDGPARVWDIIKAAPLATLTRDQGESIDFCRFSRDGTKPFLFCTVTKGGKTRIAVWDITTWRKLGGKKFLDNPISAFGISRNGKFLAIGSTKGDISIIDVQKMQVQHSIKRAHFGAVITSIEFASNGRALLSVSPEWAARVNTIPYERDWKDWQIYLLLLAMVLLSVILFYIFFEHSDSFWNFPLGREQPARPPIEAILGDRVSSDDQNIW

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1287		14		71	0.984337
1292	71			28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain