SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6638

Length: 600 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6638

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Trehalose-phosphate synthase 5 n=3 Tax=Physcomitrella patens subsp. patens RepID=A6MIZ2_PHYPA	-	-	79%
FL-Next	sp=Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	trehalose-6-phosphate synthase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha,alpha-trehalose-phosphate synthase (UDP-forming).	EC:2.4.1.15	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	89%
Blast2go	Trehalose-phosphatase.	EC:3.1.3.12	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	trehalose biosynthetic process	GO:0005992	Biological Process	89%
Blast2go	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	GO:0003825	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	trehalose-phosphatase activity	GO:0004805	Molecular Function	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23617

Fln msg: Overlapping hits, possible frame ERROR between 524 and 524, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 566 aas, your sequence is shorter than subject: 199 - 862

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: S*PWLSLIVYVGCLSVEIDPKEQDLVAPTLLGSFNCVPAFCHSDLRRRYYHGFCKQQLWPLFHYMLPLTPDHGGRFDRSLWQAYLSVNKIFADRVMEVISPDEDSVWIHDYHLMLLPTFLRKRFNKMKIGFFLHSPFPSSEIYRTLPVREEILRGLLNADLIGFHTFDYARHFxxCCSRMLGLEYESKRGYIGLEYYGR

Protein Length: 200

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTTATGTGGGTTGTCTTAGTGTTGAAATTGATCCCAAAGAGCAGGACCTGGTGGCACCCACTCTTCTTGGGAGCTTCAATTGTGTCCCTGCTTTTTGTCACAGTGATCTCAGGAGGCGGTACTATCATGGCTTCTGCAAGCAGCAGTTATGGCCACTGTTCCATTACATGCTCCCCTTGACACCTGATCACGGTGGCAGATTTGACCGGTCGCTCTGGCAGGCATATCTTTCCGTTAATAAAATCTTTGCTGATAGGGTCATGGAGGTCATTAGCCCTGATGAGGATTCTGTGTGGATCCATGATTACCATCTCATGCTTCTTCCGACATTTCTGCGAAAGAGGTTCAACAAGATGAAGATAGGCTTCTTCCTTCACAGCCCATTTCCCTCCTCTGAGATTTACCGCACTCTTCCGGTGCGTGAAGAGATTCTGAGGGGTCTCCTCAATGCTGATCTGATTGGGTTTCATACATTCGATTATGCGAGGCACTTTxxxxxxTGCTGCAGTAGGATGTTGGGATTGGAGTATGAGTCCAAGAGAGGGTATATAGGCCTGGAGTATTATGGGCGCAC

Fln Alignment:

sp_v1.1_unigene6638___IVYVGCLSVEIDPKEQDLVAPTLLGSFNCVPAFCHSDLRRRYYHGFCKQQLWPLFHYMLPLTPDHGGRFDRSLWQAYLSVNKIFADRVMEVISPDEDSVWIHDYHLMLLPTFLRKRFNKMKIGFFLHSPFPSSEIYRTLPVREEILRGLLNADLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYYGR
O23617______________VVYIGCLKEQIDTVEQDDVSQRLLENFKCVPAYIPPELFTKYYHGFCKQHLWPLFHYMLPLTPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRNELLRALLNADLIGFHTFDYARHFLSCCSRMLGLSYQSKRGTIGLEYYGR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
423		66	33		0.997452
426	33			66	0.997452
428	66			33	0.997452
431			33	66	0.997452
433			33	66	0.997452
436	33	66			0.997452
438		66	33		0.997452
439	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain