SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6624

Length: 877 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6624

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	short-chain dehydrogenase, putative (EC:1.1.1.102)	-	-	3.0e-24	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	protein	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Blast2go	Short-chain dehydrogenase/reductase SDR	IPR002198	-	60%
Blast2go	Glucose/ribitol dehydrogenase	IPR002347	-	60%
Blast2go	NAD(P)-binding domain	IPR016040	-	60%
Blast2go	Short-chain dehydrogenase/reductase, conserved site	IPR020904	-	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ20

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 60 aas, your sequence is shorter than subject: 278 - 339

Fln protein: MDRLAEGAVALGAILLVLLFYVEIVWKPKVKIGSLRNKHIIITGGSSGIGLQLAKEALLQGAFVTMIARNPVKLNMAAEDLATEVNCDRSRINTKAADVSNYKKISEAIKESHIWRPIDVLICNAGFVRSKYLENTSIEDLDLIIQTNLTGTLYTLHAALPLMKNRDGKPMPPGSIVLMCSLGSLFLLYGHDIYTATKYALRGLAESLRLQLIPYNITVSLVCPGFVETPLLDQCEAEIEDGMFTLVKIFNLYKRNRAENAKDVANYTLRAAKEEGF*

Protein Length: 279

Fln nts: TTTTTTCTCCAATCTGAGGAGGCTTTAGCACTA_-_ATGGATCGATTGGCAGAAGGTGCAGTTGCCTTGGGTGCAATCCTCCTGGTGTTGCTATTCTATGTTGAAATTGTATGGAAACCTAAGGTTAAAATTGGGAGTCTGAGAAATAAGCACATAATTATCACTGGAGGGTCCAGTGGAATTGGTCTTCAGTTGGCCAAAGAGGCGCTGCTTCAGGGTGCCTTTGTCACCATGATTGCCAGGAATCCTGTAAAACTGAACATGGCTGCTGAAGATCTTGCTACAGAAGTTAATTGTGACAGAAGTAGGATCAACACAAAGGCTGCAGATGTGAGCAACTACAAAAAGATTTCGGAGGCCATTAAGGAGTCCCATATTTGGAGACCCATAGATGTACTTATCTGCAACGCAGGGTTTGTCAGGAGTAAATATTTGGAGAATACAAGTATAGAGGACCTAGATCTCATTATCCAGACAAATTTGACTGGGACTCTCTACACTTTGCATGCGGCTCTCCCACTTATGAAAAATCGAGATGGCAAGCCCATGCCTCCAGGGTCTATTGTGCTCATGTGTTCTCTTGGATCTCTCTTTTTACTCTATGGTCATGACATATATACTGCAACGAAGTACGCTCTGAGAGGTTTGGCCGAGTCTCTGAGACTACAGTTGATACCTTACAATATCACTGTCAGCCTCGTTTGCCCCGGGTTTGTAGAGACTCCATTGTTGGATCAGTGTGAAGCTGAAATAGAGGATGGGATGTTTACATTGGTGAAGATATTCAACTTATACAAGCGAAATAGGGCTGAGAATGCAAAGGATGTTGCAAATTACACTCTCAGAGCTGCCAAGGAGGAAGGTTTTTAACAATGCACTG

Fln Alignment:

sp_v1.1_unigene6624___SLRNKHXXXXXXXXXXXLQLAKEALLQGAFVTMIARNPVKLNMAAEDLATEVNCDRSRINTKAADVSNYKKISEAIKESHIWRPIDVLICNAGFVRSKYLENTSIEDLDLIIQTNLTGTLYTLHAALPLMKNRDGKPMPPGSIVLMCSLGSLFLLYGHDIYTATKYALRGLAESLRLQLIPYNITVSLVCPGFVETPLLDQCEAEIEDGMFTLVKIFNLYKRNRAENAKDVANYTLRAAKEEGF
A9NZ20______________SLEKKHVVITGGSSGIGFAMAQEVILQGGFVTLISRSYANLQAAVERLVKDLSCDPDRVLSKVADVSDHQAITQAIQEAFQWKPIDFLICNAGLTRGGQLENQPVEDMDLVIRTNLNGTVYPVHAALPLMKERSKE--HPGSIVFIGSQASLFVFYGHSVYTATKYAVKGLAESLKLELTPYDISVSLACPGFVDTPFLDEAEKEKDEDDIKLLKIVNLYDRKNVEIPKNVAKKVLEGAKQGTF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
12	83			16	0.994512
239	14		85		0.993533
429		10		90	0.90298
473		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain