SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6612

Length: 1977 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6612
CGTCGTGACCTTGGCTGTCACTGGGGAATGCGTTACGAACCCTGTCTTTTTGAAAAATAGGTTAGTCGGCGTATGCAGCACCCAGCCCCCCAAAACTATGCTGAGGGCGTTTTTCTCTATCCAGGCGGCGTAGTCAACAAAACAGCGGGCGCCCGCAGGCCTTTTCACTATACAGGCGGCTGTAGTCAATATCATCCGACNGAACTTCGGGCGCCCTAATCAATACCATCGAACAAAGTTCTGCTCGACTTATTTTCTACCTATTTGTTCATTTACGTTACGTTTTCTCGTTCCTTCCTGCCTCGAACCAAACGAGAAAGAAATTGCACGTTACAGAGATTCATTTGTCAAAGGAATCAGGATCAAAGATGGCAATGGCAGTCACCCAGCACTCATACGCTTCCCGAGCACTGTTACAGCGCGATTGTGATATCAATGGCAATGGCAACCAAATGTGGGGAAAATGCAAACGCCTCAGACCGATCCCAGGGGCGAGAACGAGGTTTCCTCCTAACAGATTGGTGAGAATGGGGTTGAGGGAAGATGGTCCATCGGTGGCTATTGTGGGCGTCACAGGTGCCGTCGGGCAGGAGTTCTTGAGTGTGTTGAATGATAGAGATTTCCCCTACAGGAGTCTCAGATTGCTGGCGAGCAAGCGCTCTGCTGGAAAACAAATGACATTTGAGGGACGAGATTATGTAGTAGAGGAGCTCACTGAAGATAGTTTCCGCGGGATTGACATTGCTCTGTTCAGTGCTGGTGGCTCAATAAGCAAAAAGTTCGGACCCATAGCTGCACAACAGGGGACAGTTGTAGTAGACAACAGCTCTGCGTTCCGTATGGACGATGGTGTACCCCTTGTGATTCCCGAGGTGAATCCAGAGGCAATGTCTCACGTAAAACTTAGTTACAAGAAGGGAGCGCTTATTGCCAACCCAAACTGTTCAACTATCATCTGTCTGATGGCAGCTACACCCCTCCACCGTCATGCCAAGGTGAAAAGGATGGTCGTGAGCACGTATCAGGCAGCTAGTGGAGCTGGCGCAGCAGCCATGGCTGAGCTTGAACAGCAAACACGCGAGGTTTTAGAAGGAAAAGAGCCAACCTGTAAAATCTTCAGTCAACAGTATGCATTCAACCTCTTTTCACATAACTCAAAAGTCTTCCCAAATGGTTACAATGAGGAGGAGCTGAAGTTAGTAAAAGAGACCAGGAAAATTTGGAATGACCAAGATGTGAGAGTCACTGCCACTTGTGTACGGGTTCCAGTAATGCGGGCACATGCAGAGAGTATAAATTTGGAATTTGAGAAGTCACTCAGTGAGGATACTGCAAGAGAGATTCTTAAGAAGGCTCATGGGGTCATTGTCATTGATGATCGAGCTGCAAATATCTTTCCCACACCCCTTGAGGTTTCAAATAAAGATGATGTTGCTGTTGGTAGGATAAGACGAGATGCTTCTCAAAATGGTGATTATGGATTGGATATTTTCGTATGTGGGGATCAAATACGCAAGGGAGCTGCTCTAAATGCAGTACAAATTGCAGAGAGACTACTATAAGAACTTTAGGAAGTGAATAATATTTTGATGATCCGTTATCCCATTCAGTTCTTTTAGTAGTTTGTTTCACAGAAGAGATTTTTCTTGTATGAATATAAGGAATTTAAGAACGGCATTACATTTGATTAGCTTCTTGGCTCAATTTTGTCTTCTTATGATACTGGTAACAAATGGCTTACTTCTGAGGAAAGAGAGTATATTGAGGATAACCATTCTACTGTGAAATGGTTTTTTGGGGATATAGTGGACCTCGTTTAAAATGGAAATTCAAAAACTGATGGAAGAGAGTGATGTGATTGTACACCATCTCTCTCTCAGAGGACTGCTCTGTGTTTCTCGTGTAACATGTTTTGATGGAAATTCTTCCGAGTTTTCATTCTTAATGCTTTATATTTATTTTACAATAAAGTTTTTT

Ace file of the UniGene sp_v1.1_unigene6612

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartate semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate-semialdehyde dehydrogenase.	EC:1.2.1.11	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	87%
Blast2go	Cysteine and methionine metabolism	00270	87%
Blast2go	Lysine biosynthesis	00300	87%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	87%
Blast2go	Biosynthesis of plant hormones	01070	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	Aspartate-semialdehyde dehydrogenase.	EC:1.2.1.11	-	0.0	73%

Source	KEGGs	Term	Identity
AutoFact	Glycine, serine and threonine metabolism	00260	73%
AutoFact	Cysteine and methionine metabolism	00270	73%
AutoFact	Lysine biosynthesis	00300	73%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	73%
AutoFact	Biosynthesis of plant hormones	01070	73%
AutoFact	Metabolic pathways	01100	73%
AutoFact	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	87%
Blast2go	aspartate-semialdehyde dehydrogenase activity	GO:0004073	Molecular Function	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Semialdehyde dehydrogenase, NAD-binding	IPR000534	-	87%
Blast2go	Aspartate-semialdehyde dehydrogenase, beta-type	IPR005986	-	87%
Blast2go	Aspartate-semialdehyde dehydrogenase	IPR012080	-	87%
Blast2go	Semialdehyde dehydrogenase, dimerisation domain	IPR012280	-	87%
Blast2go	NAD(P)-binding domain	IPR016040	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9F9

Fln msg:

Fln protein: MAMAVTQHSYASRALLQRDCDINGNGNQMWGKCKRLRPIPGARTRFPPNRLVRMGLREDGPSVAIVGVTGAVGQEFLSVLNDRDFPYRSLRLLASKRSAGKQMTFEGRDYVVEELTEDSFRGIDIALFSAGGSISKKFGPIAAQQGTVVVDNSSAFRMDDGVPLVIPEVNPEAMSHVKLSYKKGALIANPNCSTIICLMAATPLHRHAKVKRMVVSTYQAASGAGAAAMAELEQQTREVLEGKEPTCKIFSQQYAFNLFSHNSKVFPNGYNEEELKLVKETRKIWNDQDVRVTATCVRVPVMRAHAESINLEFEKSLSEDTAREILKKAHGVIVIDDRAANIFPTPLEVSNKDDVAVGRIRRDASQNGDYGLDIFVCGDQIRKGAALNAVQIAERLL*

Protein Length: 399

Fln nts: CGTCGTGACCTTGGCTGTCACTGGGGAATGCGTTACGAACCCTGTCTTTTTGAAAAATAGGTTAGTCGGCGTATGCAGCACCCAGCCCCCCAAAACTATGCTGAGGGCGTTTTTCTCTATCCAGGCGGCGTAGTCAACAAAACAGCGGGCGCCCGCAGGCCTTTTCACTATACAGGCGGCTGTAGTCAATATCATCCGACaGAACTTCGGGCGCCCTAATCAATACCATCGAACAAAGTTCTGCTCGACTTATTTTCTACCTATTTGTTCATTTACGTTACGTTTTCTCGTTCCTTCCTGCCTCGAACCAAACGAGAAAGAAATTGCACGTTACAGAGATTCATTTGTCAAAGGAATCAGGATCAAAG_-_ATGGCAATGGCAGTCACCCAGCACTCATACGCTTCCCGAGCACTGTTACAGCGCGATTGTGATATCAATGGCAATGGCAACCAAATGTGGGGAAAATGCAAACGCCTCAGACCGATCCCAGGGGCGAGAACGAGGTTTCCTCCTAACAGATTGGTGAGAATGGGGTTGAGGGAAGATGGTCCATCGGTGGCTATTGTGGGCGTCACAGGTGCCGTCGGGCAGGAGTTCTTGAGTGTGTTGAATGATAGAGATTTCCCCTACAGGAGTCTCAGATTGCTGGCGAGCAAGCGCTCTGCTGGAAAACAAATGACATTTGAGGGACGAGATTATGTAGTAGAGGAGCTCACTGAAGATAGTTTCCGCGGGATTGACATTGCTCTGTTCAGTGCTGGTGGCTCAATAAGCAAAAAGTTCGGACCCATAGCTGCACAACAGGGGACAGTTGTAGTAGACAACAGCTCTGCGTTCCGTATGGACGATGGTGTACCCCTTGTGATTCCCGAGGTGAATCCAGAGGCAATGTCTCACGTAAAACTTAGTTACAAGAAGGGAGCGCTTATTGCCAACCCAAACTGTTCAACTATCATCTGTCTGATGGCAGCTACACCCCTCCACCGTCATGCCAAGGTGAAAAGGATGGTCGTGAGCACGTATCAGGCAGCTAGTGGAGCTGGCGCAGCAGCCATGGCTGAGCTTGAACAGCAAACACGCGAGGTTTTAGAAGGAAAAGAGCCAACCTGTAAAATCTTCAGTCAACAGTATGCATTCAACCTCTTTTCACATAACTCAAAAGTCTTCCCAAATGGTTACAATGAGGAGGAGCTGAAGTTAGTAAAAGAGACCAGGAAAATTTGGAATGACCAAGATGTGAGAGTCACTGCCACTTGTGTACGGGTTCCAGTAATGCGGGCACATGCAGAGAGTATAAATTTGGAATTTGAGAAGTCACTCAGTGAGGATACTGCAAGAGAGATTCTTAAGAAGGCTCATGGGGTCATTGTCATTGATGATCGAGCTGCAAATATCTTTCCCACACCCCTTGAGGTTTCAAATAAAGATGATGTTGCTGTTGGTAGGATAAGACGAGATGCTTCTCAAAATGGTGATTATGGATTGGATATTTTCGTATGTGGGGATCAAATACGCAAGGGAGCTGCTCTAAATGCAGTACAAATTGCAGAGAGACTACTATAA___GAACTTTAGGAAGTGAATAATATTTTGATGATCCGTTATCCCATTCAGTTCTTTTAGTAGTTTGTTTCACAGAAGAGATTTTTCTTGTATGAATATAAGGAATTTAAGAACGGCATTACATTTGATTAGCTTCTTGGCTCAATTTTGTCTTCTTATGATACTGGTAACAAATGGCTTACTTCTGAGGAAAGAGAGTATATTGAGGATAACCATTCTACTGTGAAATGGTTTTTTGGGGATATAGTGGACCTCGTTTAAAATGGAAATTCAAAAACTGATGGAAGAGAGTGATGTGATTGTACACCATCTCTCTCTCAGAGGACTGCTCTGTGTTTCTCGTGTAACATGTTTTGATGGAAATTCTTCCGAGTTTTCATTCTTAATGCTTTATATTTATTTTACAATAAAGTTTTTT

Fln Alignment:

sp_v1.1_unigene6612___MAMAVTQHSYASRALLQRDCDINGNGNQMWGKCKRLRPIPGARTRFPPNRLVRMGLREDGPSVAIVGVTGAVGQEFLSVLNDRDFPYRSLRLLASKRSAGKQMTFEGRDYVVEELTEDSFRGIDIALFSAGGSISKKFGPIAAQQGTVVVDNSSAFRMDDGVPLVIPEVNPEAMSHVKLSYKKGALIANPNCSTIICLMAATPLHRHAKVKRMVVSTYQXXXXXXXXXXXELEQQTREVLEGKEPTCKIFSQQYAFNLFSHNSKVFPNGYNEEELKLVKETRKIWNDQDVRVTATCVRVPVMRAHAESINLEFEKSLSEDTAREILKKAHGVIVIDDRAANIFPTPLEVSNKDDVAVGRIRRDASQNGDYGLDIFVCGDQIRKGAALNAVQIA
D5A9F9______________MAMAVAHHSYASRVLSETDFAINGNGSQMWGKSKCLRSIPGTRTRFPPKRVVRMGLREDGPSVAVVGITGAVGQEFLSVLSDRDFPYRSLTLLASKRSAGKQMTFEGRDYVVEELTEDSFHGIDIALFSAGGSISKKFGPIAAQQGTVVVDNSSAFRMDDGVPLVIPEVNPEAMSHIKLSSKKGAIIANPNCSTIICLMAATPLHRHAKVKRMVVSTYQAASGAGAAAMAELEQQTREVLEGKEPTCKIFSQQYAFNLFSHNSQVFPNGYNEEELKLVKETRKIWNDQDVRVTATCIRVPVMRAHAESINLEFEKSLNEDTAREILKKADGVIVIDDRAANNFPTPLEVSNKDDVAVGRIRQDASQNGDYGLDIFVCGDQIRKGAALNAVQIA

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
161	25	75			0.996473
163			25	75	0.996473
164			25	75	0.996473
165			25	75	0.996473
166		75	25		0.996473
215		66		33	0.997452
298		60	40		1.0
317	33			66	0.997452
318	33		66		0.997452
323	66		33		0.997452
414	33			66	0.997452
416	66		33		0.997452
417		66	33		0.997452
418	66		33		0.997452
445			33	66	0.997452
448	66		33		0.997452
471		33		66	0.997452
1003	12		87		0.992554
1151		80		20	0.995493
1209	80		20		0.995493
1547	90		9		0.999842
1548			90	9	0.999842
1549	90	9			0.999842
1551	90			9	0.999842
1559	90		9		0.999842
1928		66		33	1.0
1929		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain