SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6611

Length: 2546 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6611
GTTTTTCTATATTCCCGTGCAATAAGCCAATCAATATCTAGCATATAAAACACTTCTAATTGCCAAATCGTGGCACATGACAGAGGGCGTGTTAGTCTTAACTCACAAATCCATATCTTAAGATCCAGATATATACATTGCTATCTGAGTCAGAGTGTCTTGGTCCGCGTGGAGCCACAACATGGATATTGCCACAGAACAAACATCGAACTCACGATTATTCAAAAGTTCAATTATTTTGTTAAAGTGCATGCATCTTGCCTTCCTGGTGTCAAGCTAGAGCTCGTTGCTTGGGAGAAAATGGCGACTGTAGAATCGACAATCAAAAATTTTTCCAGTGTAAATTTTGATGAAGCAGACGATGGCCAAGGCTGGGCTTCACCTCCTCTGGCGAAAAATTTAGGGCTTTTGTCTGCAAAACAGATAGAACTTGCAAGAATGTTGATAGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAAGAAAAAAGCTTTTTTGACCAGGTAGAAAAGCTTGATACCAGTTATCCAGGTGGGTTGCGTTCATATATACATAATGCTAGGCAACTCTTGGCAGATTCAAAAGCTGGGAAGAATCCATTTAGTGGCTTTAGCCCTTCAGTACCAGCTGGTGAGGTGTTGTCATTTGGTGATGAGAATTTTATCAAATTTGAAGAAGCTGGGATTAGGGAAGCATGTGATGCTGCATTTGTTCTTGTAGCCGGGGGACTTGGGGAGCGTCTTGGTTATGGTGGTATCAAATTGGCACTGCCTTCAGAAACAACAACTGGAACTTGCTTCTTACAATTGTATGTAGAGGTTATACTGGCTCTCCAGGAAGCTAGCTGTAAACAGAAGGAAGGGAATGTTGACAGGCATATTCCCTTAGTGATAATGACATCAGATGATACACACAGCCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAGTCTAATCAAGTGCACCTTTTGAAGCAGGAAAAGGTGGCATGCTTGGCAGACACTGATGCTAATTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCGCATGGGCATGGAGATGTGCATGCACTTCTTTATTCTAGTGGGCTTCTACATAAATGGCAAAGCTCAGGACTGAAATGGGTTTTGTTTTTCCAAGACACTAACGGTTTACTCTTCAAGGGAATACCTGCATCCTTAGGTGTAAGTGCAAGCAAGGATTTTCATGTTAATTCTTTGGCTGTTCCTCGTAAAGCCAAAGAAGCAATTGGTGGCATTGCTCAACTTACTCATGAAGATGGGAGAAGAATGGTGATAAATGTAGAGTACAACCAGCTTGATCCTTTACTTCGAGCCACTGGACATGTAGATGGAGATGTTAATGACGAAACAGGATACTCACCATACCCCGGGAATATCAACCAGCTAATAATAAGGCTTGGGCCATATATAGAGGAGCTTTCAAGAACAAAAGGAGCTATTACAGAGTTTGTAAACCCAAAGTACAAGGACTCTAGTAAAACATCCTTCAAGTCCTCGACTCGGTTAGAATGTATGATGCAAGACTATCCAAGAACATTGCTTCCCTCAGCTCGAGTCGGATTTACTGTGATGGACACATGGCTTGCTTATGCACCAGTGAAAAACAATCCAGAAGATGCTGCTAAGGTACCAAAGGGCAATCCTTATCATAGTGCAACAAGTGGAGAAATGGCCATTTATCAGGCACACAGCCGAATTCTCAGGAAGGTGGGTGTTAAGATAGAAGATCCTCAGGTGGGCATTTTTAATGGACAAGAAGTTGAAATTTGGCCACGGATTGTGTGGAGCCCAAGGTGGGCTTTGACATTTTCGGATGTGAAGAACAAATTGACAGGCAATTGTGAAATATCTCAAAAATCAACCTTGGTTGTGAAGGGTGCAAATATTCACATTAATGATCTCTCTCTTGATGGGGCATTGATAGTAAATGCCATTGACCAAGCTGAGGTGAAGCTGTCACCTCACGTACAAAATGATGGATGGATGTTTGAACCTGTCGACTATAAAGATAATTCCATACCAGAGGAAATCCGGATAAGGGGGTTTGCTATAAAAAAGAATGACCAAACAATATTGAACTATGATCAACCTGGAAAGTACTGTGTTCAGTTCCAGAGTGTAAGATGAATGGAATAAACTAGTTGGATCAGAGGCTGATTCTTCTGCTTTTTAGGTCTTCGAGACTCCTTGAGTCCCATTTTTTTAGTTCATCTTCATGATTTTTCTGAATAAAGTCCATAAGAGTTTTGAATCTTGTTCGCATCATACAGAACGCATATATTATTGGCCTCGTCAGATAATAGGATGTGCCTAAAATATTGTGGTTTCCAGTGATAAGCTTCATTAAAGCAATATGCTTTTACAAGAATTGTAACATGTCTTGTAATTATTCTATTTAGAGAATGTGATGTTACTCTTTAAATGTAATTACCATTTGAAGCCATGTAAGTGTGTGAATGACAAGGTTGGTATGAT

Ace file of the UniGene sp_v1.1_unigene6611

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-n-acteylglucosamine pyrophosphorylase, putative n=1 Tax=Ricinus communis RepID=B9S2T0_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	udp-sugar pyrophospharylase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.7.1-	-	0.0	84%
Blast2go	UTP--xylose-1-phosphate uridylyltransferase.	EC:2.7.7.11	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	84%
Blast2go	Glucuronate-1-phosphate uridylyltransferase.	EC:2.7.7.44	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Pentose and glucuronate interconversions	00040		84%
Blast2go	Ascorbate and aldarate metabolism	00053		84%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	UTP--glucose-1-phosphate uridylyltransferase.	EC:2.7.7.9	-	84%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	84%
Blast2go	Galactose metabolism	00052	84%
Blast2go	Starch and sucrose metabolism	00500	84%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	84%
Blast2go	UTP:galactose-1-phosphate uridylyltransferase activity	GO:0017103	Molecular Function	84%
Blast2go	UTP:xylose-1-phosphate uridylyltransferase activity	GO:0047338	Molecular Function	84%
Blast2go	glucuronate-1-phosphate uridylyltransferase activity	GO:0047350	Molecular Function	84%
Blast2go	UTP:glucose-1-phosphate uridylyltransferase activity	GO:0003983	Molecular Function	84%
Blast2go	UTP:arabinose-1-phosphate uridylyltransferase activity	GO:0010491	Molecular Function	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UTP--glucose-1-phosphate uridylyltransferase	IPR002618	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMQ2

Fln msg: Overlapping hits, possible frame ERROR between 540 and 504,

Fln protein: MATVESTIKNFSSVNFDEADDGQGWASPPLAKNLGLLSAKQIELARMLIEEAQQHLFAHWPEPGIDDxxxxxxxxxxxxxxTSYPGGLRSYIHNARQLLADSKAGKNPFSGFSPSVPAGEVLSFGDENFIKFEEAGIREACDAAFVLVAGGLGERLGYGGIKLALPSETTTGTCFLQLYVEVILALQEASCKQKEGNVDRHIPLVIMTSDDTHSRTQELLESNAYFGMKSNQVHLLKQEKVACLADTDANLALDPSEKYKIQTKPHGHGDVHALLYSSGLLHKWQSSGLKWVLFFQDTNGLLFKGIPASLGVSASKDFHVNSLAVPRKAKEAIGGIAQLTHEDGRRMVINVEYNQLDPLLRATGHVDGDVNDETGYSPYPGNINQLIIRLGPYIEELSRTKGAITEFVNPKYKDSSKTSFKSSTRLECMMQDYPRTLLPSARVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYQAHSRILRKVGVKIEDPQVGIFNGQEVEIWPRIVWSPRWALTFSDVKNKLTGNCEISQKSTLVVKGANIHINDLSLDGALIVNAIDQAEVKLSPHVQNDGWMFEPVDYKDNSIPEEIRIRGFAIKKNDQTILNYDQPGKYCVQFQSVR*

Protein Length: 634

Fln nts: GTTTTTCTATATTCCCGTGCAATAAGCCAATCAATATCTAGCATATAAAACACTTCTAATTGCCAAATCGTGGCACATGACAGAGGGCGTGTTAGTCTTAACTCACAAATCCATATCTTAAGATCCAGATATATACATTGCTATCTGAGTCAGAGTGTCTTGGTCCGCGTGGAGCCACAACATGGATATTGCCACAGAACAAACATCGAACTCACGATTATTCAAAAGTTCAATTATTTTGTTAAAGTGCATGCATCTTGCCTTCCTGGTGTCAAGCTAGAGCTCGTTGCTTGGGAGAAA_-_ATGGCGACTGTAGAATCGACAATCAAAAATTTTTCCAGTGTAAATTTTGATGAAGCAGACGATGGCCAAGGCTGGGCTTCACCTCCTCTGGCGAAAAATTTAGGGCTTTTGTCTGCAAAACAGATAGAACTTGCAAGAATGTTGATAGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACCAGTTATCCAGGTGGGTTGCGTTCATATATACATAATGCTAGGCAACTCTTGGCAGATTCAAAAGCTGGGAAGAATCCATTTAGTGGCTTTAGCCCTTCAGTACCAGCTGGTGAGGTGTTGTCATTTGGTGATGAGAATTTTATCAAATTTGAAGAAGCTGGGATTAGGGAAGCATGTGATGCTGCATTTGTTCTTGTAGCCGGGGGACTTGGGGAGCGTCTTGGTTATGGTGGTATCAAATTGGCACTGCCTTCAGAAACAACAACTGGAACTTGCTTCTTACAATTGTATGTAGAGGTTATACTGGCTCTCCAGGAAGCTAGCTGTAAACAGAAGGAAGGGAATGTTGACAGGCATATTCCCTTAGTGATAATGACATCAGATGATACACACAGCCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAGTCTAATCAAGTGCACCTTTTGAAGCAGGAAAAGGTGGCATGCTTGGCAGACACTGATGCTAATTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCGCATGGGCATGGAGATGTGCATGCACTTCTTTATTCTAGTGGGCTTCTACATAAATGGCAAAGCTCAGGACTGAAATGGGTTTTGTTTTTCCAAGACACTAACGGTTTACTCTTCAAGGGAATACCTGCATCCTTAGGTGTAAGTGCAAGCAAGGATTTTCATGTTAATTCTTTGGCTGTTCCTCGTAAAGCCAAAGAAGCAATTGGTGGCATTGCTCAACTTACTCATGAAGATGGGAGAAGAATGGTGATAAATGTAGAGTACAACCAGCTTGATCCTTTACTTCGAGCCACTGGACATGTAGATGGAGATGTTAATGACGAAACAGGATACTCACCATACCCCGGGAATATCAACCAGCTAATAATAAGGCTTGGGCCATATATAGAGGAGCTTTCAAGAACAAAAGGAGCTATTACAGAGTTTGTAAACCCAAAGTACAAGGACTCTAGTAAAACATCCTTCAAGTCCTCGACTCGGTTAGAATGTATGATGCAAGACTATCCAAGAACATTGCTTCCCTCAGCTCGAGTCGGATTTACTGTGATGGACACATGGCTTGCTTATGCACCAGTGAAAAACAATCCAGAAGATGCTGCTAAGGTACCAAAGGGCAATCCTTATCATAGTGCAACAAGTGGAGAAATGGCCATTTATCAGGCACACAGCCGAATTCTCAGGAAGGTGGGTGTTAAGATAGAAGATCCTCAGGTGGGCATTTTTAATGGACAAGAAGTTGAAATTTGGCCACGGATTGTGTGGAGCCCAAGGTGGGCTTTGACATTTTCGGATGTGAAGAACAAATTGACAGGCAATTGTGAAATATCTCAAAAATCAACCTTGGTTGTGAAGGGTGCAAATATTCACATTAATGATCTCTCTCTTGATGGGGCATTGATAGTAAATGCCATTGACCAAGCTGAGGTGAAGCTGTCACCTCACGTACAAAATGATGGATGGATGTTTGAACCTGTCGACTATAAAGATAATTCCATACCAGAGGAAATCCGGATAAGGGGGTTTGCTATAAAAAAGAATGACCAAACAATATTGAACTATGATCAACCTGGAAAGTACTGTGTTCAGTTCCAGAGTGTAAGATGA___ATGGAATAAACTAGTTGGATCAGAGGCTGATTCTTCTGCTTTTTAGGTCTTCGAGACTCCTTGAGTCCCATTTTTTTAGTTCATCTTCATGATTTTTCTGAATAAAGTCCATAAGAGTTTTGAATCTTGTTCGCATCATACAGAACGCATATATTATTGGCCTCGTCAGATAATAGGATGTGCCTAAAATATTGTGGTTTCCAGTGATAAGCTTCATTAAAGCAATATGCTTTTACAAGAATTGTAACATGTCTTGTAATTATTCTATTTAGAGAATGTGATGTTACTCTTTAAATGTAATTACCATTTGAAGCCATGTAAGTGTGTGAATGACAAGGTTGGTATGAT

Fln Alignment:

sp_v1.1_unigene6611___MATVESTIKNFSSVNFDEADDGQGWASPPLAKNLGLLSAKQIELARMLIEEAQQHLFAHWPEPGIDDExxxxxxxxxxxxDTSYPGGLRSYIHNARQLLADSKAGKNPFSGFSPSVPAGEVLSFGDENFIKFEEAGIREACDAAFVLVAXXXXXXXXXXXIKLALPSETTTGTCFLQLYVEVILALQEASCKQKEGNVDRHIPLVIMTSDDTHSRTQELLESNAYFGMKSNQVHLLKQEKVACLADTDANLALDPSEKYKIQTKPHGHGDVHALLYSSGLLHKWQSSGLKWVLFFQDTNGLLFKGIPASLGVSASKDFHVNSLAVPRKAKEAIGGIAQLTHEDGRRMVINVEYNQLDPLLRATGHVDGDVNDETGYSPYPGNINQLIIRLGPYIEELSRTKGAITEFVNPXXXXXXXXXXXXXTRLECMMQDYPRTLLPSARVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYQAHSRILRKVGVKIEDPQVGIFNGQEVEIWPRIVWSPRWALTFSDVKNKLTGNCEISQKSTLVVKGANIHINDLSLDGALIVNAIDQAEVKLSPHVQNDGWMFEPVDYKDNSIPEEIRIRGFAIKKNDQTILNYDQPGKYCVQFQSV
B8LMQ2______________MATAESTIQKFSTVHVDEADDSQGWASPPLEKNLGLLSTRQIELARMLIEEAQQHLFAHWAEPGIDDExxxxxxxxxxxxDASYPGGLRSYIHNARQLLTDSKAGKNPFDGFTPSVPAGEVLSFGDENFIKFEEAGIKEACDAAFVLVAGGLGERLGYGGIKLALPSETTTGTCFLQVYVESILALQEASCKQNEGNVDRHIPLVIMTSDDTHSRTQELLKSNAYFGMKSNQVHLLKQEKVACLADTDANLALDPSEKYKIQTKPHGHGDVHALLYSSGLLHKWQISGLKWVLFFQDTNGLLFKAIPASLGVSASKDFHVNSLAVPRKAKEAIGGITQLTHEDGRRMVINVEYNQLDPLLRATGHVNGDVNDETGYSPYPGNINQLILRLGPYIEELSKTQGAITEFVNPKYKDSSKTSFKSSTRLECMMQDYPRTLLPSARVGFTVMDTWLAYAPVKSNPEDAAKVPKGNPYHSATSGEMAIYRAHSQILRKVGVKIEDPQVGIFNGQEVEIWPRIVWSPNWALTFLDVKKKLTGNCEISQKSTLVVKGANIHINDLSLDGALIVNAIDQAEVKLSPHVQNNGWIFEHVDYKDTSIPEEIRIRGFAIKKNDQTILTYDQPGKYCVQFHSV

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
102	33	66			0.997452
104		66	33		0.997452
105	66		33		0.997452
106		66	33		0.997452
198	33			66	0.997452
199	66			33	0.997452
200		66	33		0.997452
201	66		33		0.997452
202	66	33			0.997452
203	33			66	0.997452
205	25	50	25		0.995533
210	66		33		0.997452
212		33		66	0.997452
213		66		33	0.997452
214	33	33		33	0.997753
215		33	66		1.0
217	33	33		33	0.997753
224	66		33		0.997452
225	33			66	0.997452
226	33	66			0.997452
227	66	33			0.997452
228		33	66		0.997452
230		33		66	0.997452
1152	44	55			1.0
1693	11	88			0.923564
1695	88		11		0.923564
1696	88		11		0.923564
1755	12		87		0.992554
1836	90		10		0.90298
2011	77		22		0.999999
2012	77			22	0.999999
2013		22	77		0.999999
2014		77	22		0.999999
2018		22	77		0.999999
2019		22	77		0.999999
2022	77			22	0.999999
2023	77		22		0.999999
2070	25		75		1.0
2093	87			12	0.992554
2105	16		83		0.994512
2111		11	88		0.923564
2112			88	11	0.923564
2113		22	77		0.999999
2114	11		88		0.923564
2515	25			75	0.996473
2516	25		75		0.996473
2517	25			75	0.996473
2520	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain