SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6610

Length: 2051 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene6610
ATATGTGCGTCGTGACCTTGGCTGTCATTGGTGTCCTCCATGCAGGACTTTCACCCCTGTTTTGTCCGAAATCTATGCAAAGCTATTGCAGAAGGGGGACTTCGAGATCGTCTTCATCTCCACAGATGTTGATGAGAAATCATTCGAGAAATATCATCACATCATGCCCTGGCTTGCCCTGCCATACTCAGATGAAAATACAAGGCATAAGCTTGATCTGACCTTTCAGGTCATTAGCATTCCATGCCTTGTTGTTATAGACAAAGAGGGCAGATTAGTGACCACCGAAGGTGTGGAAATAATTGAAGATCATGGTGTCGAGGCATATCCATTCACTGCAGAGAGACTCGATCAGTTGAGGGCCGAGGAAGAGGCCTTGAGGGCTGCACAGACTGTAGAGTCTCTTCTGGTGTCTGATGAGCGAGATTTTGTCATCGCCCATGGAAGAAGGAAGGTCGCGGTAGCTGAGCTCGTTGGGAAAATAGTGGGCCTGTATTTTTCTGATCTCTGGTGTGGTTCCTCCAGAAATTTCACACCTCAGCTTGTGGAGATTTACAATGAGCTTATGAAGAAAGGGGTGGCCTTTGAGATTGTGTTTGTCTCGAGTGACACAGACGAAGAAGCCTTTGAAGAGTATTATGCCAGGATGCCATGGCTGGCCCTGCCGTTTGAAGACAAAATTCAGAAAAAACTGTTTCGGTATTTTCAAGTTAAGGCCACCCCAACCTTGATTGTTTTAGGCCCAGATGGTAAAACAGTACAGATGGAAGCACTGGGGCTAATTCAAGATTATGGAATCCAAGCTTACCCATTCACAGAGGAGAGATTGAAGGAACTTCAAGCCGAAGAGAAAGCCAGACAAGAAGCACAAACCCTAGAGTCCCTTTTGGTCTCTGAAGATCGGGATTTTCTGATCAAGAATGGAGGTTCAAATGTCCCAGTTTCCGAGCTTGTGGGTAAGACAGTTGCTCTGTATTTCTCTGCTCATTGGTGCCCTCCTTGCCGAGTTTTCACTCCGAAGCTTATAGAGGTATACAATGAACTTAAGGAAAGAGGAGAAGTGTTTGAGGTGGTTTTCATCTCTAGTGATGAAGACGAAGACGCTTTTAAAGACTACTACTCAAGCATGCCATGGCTGGCTCTCCCATTTGGAGATAAAACTAAAAAGTATCTCACACGGATTTTCCGTATTGAAGGCATACCAACCATGATTGTGATTGGTCCCGATGGAAAAACTGTGACAGATGATGCCATAAGTGTGGTCTCTGTCCATGGGGCCAAGGCTTATCCTTTCACCGATGCTCAGCTTATAAAGCTTCAGAAGGAGATCGAAGAGCTAGCTGAGAAATCACCCAAGGAGGTACGATACAGCCAACATGAACACCCCCTTTTATTGATGCAAAGGGACGCATTCAACTGTGATGGATGTGATGAAGAAGGAAGTGCATGGTCTTATTATTGCAAAATATGTGAGTATGATCTTCATCTGACTTGTGCTTTAAAGGATCAACAGGGTCCCCAGAAACCATGACAAGCAACAGGACACAGATGCTACTACTGATGAAAACTGCAAGCCAGCTTGAGTAATCTGTGATGGAGATAGTTGTTATAGGGTCTAGGCCTAATGATATTGGTGTCTTATCACCAGGTTGGACTATCATTATAGCTGCCTGCATTAATCAACACTGTTGCCGCTAGCTTCACAGAGTTTTACATTTCTTACACAAATCTTTCATGAACAATGAAAACTCCTTTGTCGTATGGCTAATAGTTTTATAGAAATCTACAGTAAACAATGTGAGATAAAAGAGGCTTTAGAATTGTCTTGCCCATATTATTTCAAGGTTTGAGAATTGAATGCAGGCAGCAGCCACCCATGATGTAGAGCTTCAGTGCATTTAATTCATTGCTTGAGACCCCATGTTTATCTTTCTATAGATTGATAGATACTGTGTTCTGTTGAGAGGAAGGTCATATATTTTCTCAATAAATGAAGTTCCTTATAGTCTGTGTCTAACTTCTACAATCAGATCTCATCGTGCATTCAAAGT

Ace file of the UniGene sp_v1.1_unigene6610 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoredoxin, putative n=1 Tax=Ricinus communis RepID=B9SHA0_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	dc1 domain-containing protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	74%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	74%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	74%

Source	InterPros	Term	Type	Identity
Blast2go	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	74%
Blast2go	C1-like	IPR011424	-	74%
Blast2go	Thioredoxin fold	IPR012335	-	74%
Blast2go	Thioredoxin-like fold	IPR012336	-	74%
Blast2go	Thioredoxin-like	IPR017936	-	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXQ2

Fln msg: Separated hits, possible frame ERROR between 1339 and 1524, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is shorter than subject: 528 - 587

Fln protein: YVRRDLGCHWCPPCRTFTPVLSEIYAKLLQKGDFEIVFISTDVDEKSFEKYHHIMPWLALPYSDENTRHKLDLTFQVISIPCLVVIDKEGRLVTTEGVEIIEDHGVEAYPFTAERLDQLRAEEEALRAAQTVESLLVSDERDFVIAHGRRKVAVAELVGKIVGLYFSDLWCGSSRNFTPQLVEIYNELMKKGVAFEIVFVSSDTDEEAFEEYYARMPWLALPFEDKIQKKLFRYFQVKATPTLIVLGPDGKTVQMEALGLIQDYGIQAYPFTEERLKELQAEEKARQEAQTLESLLVSEDRDFLIKNGGSNVPVSELVGKTVALYFSAHWCPPCRVFTPKLIEVYNELKERGEVFEVVFISSDEDEDAFKDYYSSMPWLALPFGDKTKKYLTRIFRIEGIPTMIVIGPDGKTVTDDAISVVSVHGAKAYPFTDAQLIKLQKEIEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNHDKQQDTDATTDENCKPA*

Protein Length: 529

Fln nts: AT_-_ATGTGCGTCGTGACCTTGGCTGTCATTGGTGTCCTCCATGCAGGACTTTCACCCCTGTTTTGTCCGAAATCTATGCAAAGCTATTGCAGAAGGGGGACTTCGAGATCGTCTTCATCTCCACAGATGTTGATGAGAAATCATTCGAGAAATATCATCACATCATGCCCTGGCTTGCCCTGCCATACTCAGATGAAAATACAAGGCATAAGCTTGATCTGACCTTTCAGGTCATTAGCATTCCATGCCTTGTTGTTATAGACAAAGAGGGCAGATTAGTGACCACCGAAGGTGTGGAAATAATTGAAGATCATGGTGTCGAGGCATATCCATTCACTGCAGAGAGACTCGATCAGTTGAGGGCCGAGGAAGAGGCCTTGAGGGCTGCACAGACTGTAGAGTCTCTTCTGGTGTCTGATGAGCGAGATTTTGTCATCGCCCATGGAAGAAGGAAGGTCGCGGTAGCTGAGCTCGTTGGGAAAATAGTGGGCCTGTATTTTTCTGATCTCTGGTGTGGTTCCTCCAGAAATTTCACACCTCAGCTTGTGGAGATTTACAATGAGCTTATGAAGAAAGGGGTGGCCTTTGAGATTGTGTTTGTCTCGAGTGACACAGACGAAGAAGCCTTTGAAGAGTATTATGCCAGGATGCCATGGCTGGCCCTGCCGTTTGAAGACAAAATTCAGAAAAAACTGTTTCGGTATTTTCAAGTTAAGGCCACCCCAACCTTGATTGTTTTAGGCCCAGATGGTAAAACAGTACAGATGGAAGCACTGGGGCTAATTCAAGATTATGGAATCCAAGCTTACCCATTCACAGAGGAGAGATTGAAGGAACTTCAAGCCGAAGAGAAAGCCAGACAAGAAGCACAAACCCTAGAGTCCCTTTTGGTCTCTGAAGATCGGGATTTTCTGATCAAGAATGGAGGTTCAAATGTCCCAGTTTCCGAGCTTGTGGGTAAGACAGTTGCTCTGTATTTCTCTGCTCATTGGTGCCCTCCTTGCCGAGTTTTCACTCCGAAGCTTATAGAGGTATACAATGAACTTAAGGAAAGAGGAGAAGTGTTTGAGGTGGTTTTCATCTCTAGTGATGAAGACGAAGACGCTTTTAAAGACTACTACTCAAGCATGCCATGGCTGGCTCTCCCATTTGGAGATAAAACTAAAAAGTATCTCACACGGATTTTCCGTATTGAAGGCATACCAACCATGATTGTGATTGGTCCCGATGGAAAAACTGTGACAGATGATGCCATAAGTGTGGTCTCTGTCCATGGGGCCAAGGCTTATCCTTTCACCGATGCTCAGCTTATAAAGCTTCAGAAGGAGATCGAAGAGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAACCATGACAAGCAACAGGACACAGATGCTACTACTGATGAAAACTGCAAGCCAGCTTGA___GTAATCTGTGATGGAGATAGTTGTTATAGGGTCTAGGCCTAATGATATTGGTGTCTTATCACCAGGTTGGACTATCATTATAGCTGCCTGCATTAATCAACACTGTTGCCGCTAGCTTCACAGAGTTTTACATTTCTTACACAAATCTTTCATGAACAATGAAAACTCCTTTGTCGTATGGCTAATAGTTTTATAGAAATCTACAGTAAACAATGTGAGATAAAAGAGGCTTTAGAATTGTCTTGCCCATATTATTTCAAGGTTTGAGAATTGAATGCAGGCAGCAGCCACCCATGATGTAGAGCTTCAGTGCATTTAATTCATTGCTTGAGACCCCATGTTTATCTTTCTATAGATTGATAGATACTGTGTTCTGTTGAGAGGAAGGTCATATATTTTCTCAATAAATGAAGTTCCTTATAGTCTGTGTCTAACTTCTACAATCAGATCTCATCGTGCATTCAAAGT

Fln Alignment:

sp_v1.1_unigene6610___YVRRDLGCHWCPPCRTFTPVLSEIYAKLLQKGDFEIVFISTDVDEKSFEKYHHIMPWLALPYSDENTRHKLDLTFQVISIPCLVVIDKEGRLVTTEGVEIIEDHGVEAYPFTXXXXXXXXXXXXXXXXXQTVESLLVSDERDFVIAHGRRKVAVAELVGKIVGLYFSDLWCGSSRNFTPQLVEIYNELMKKGVAFEIVFVSSDTDEEAFEEYYARMPWLALPFEDKIQKKLFRYFQVKATPTLIVLGPDGKTVQMEALGLIQDYGIQAYPFTEERLKELQAEEKARQEAQTLESLLVSEDRDFLIKNGGSNVPVSELVGKTVALYFSAHWCPPCRVFTPKLIEVYNELKERGEVFEVVFISSDEDEDAFKDYYSSMPWLALPFGDKTKKYLTRIFRIEGIPTMIVIGPDGKTVTDDAISVVSVHGAKAYPFTDAQLIKLQKEIEELAEKSPKEVRYSQHEHPLLLMQRDAFNCDGCDEEGSAWSYYCKICEYDLHLTCALKDQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNHDKQQDTDATTDENCKPA*VICDGDSCYR
A9NXQ2______________YVGLYFSAHWCPPCRYFTPVLSEIYKKLLEKGDFEIVFISADRDEKSFEEYHHTMPWLALPFSDENTRKKLDQVFKVDGIPCLVFLDKEGRAITTEGVETIGEYGVEAYPFTAERIDELKAKEEALRAAQTVESLLLSDERDFVLGHEGTQVPVAELAGKTVGLYFSAHWCGPCRSFTPQLVEIYNELLKKGEAFEIVFLSRDKEEKAFEEYYASMPWLALPFADNTQKKLSRYFRIEGIPTLIILGPDGKTIRNDAVGLIREYGIRAYPFTKERLDDLEAEEKAKREAQTLESVLVSDERNFVIKHGGAQVLVSELVGKTVALYFSAHWCPPCRGFTPKLIQVYNELKERGEAFEIVFISSDKDQEAFEDYYKSMPWLALPFGDKTKKDLSRIFRVRGIPSLIVVGPDGKTLTDNARGAVSTHGAKAYPFTDAHLERLEKEMEELVEKSPKEIRYSQHEHPLVLTRRPVFCCDGCNEGGTAWSYYCKDCDYDLHLTCAFKDQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNQDKGQGTDAAMDENCKPAGVICDGDVCYK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1162			71	28	1.0
1233		80		20	0.995493
1299		20		80	0.995493
1460	83		16		0.994512
1565	16	83			0.994512
1591		20		80	0.995493
1623		80	20		0.995493
1624	80			20	0.995493
1625	80		20		0.995493
1628			20	80	0.995493
1630		20		80	0.995493
1631	20	80			0.995493
1633		75	25		0.996473
1643	80		20		0.995493
1807	33		66		1.0
1895		33		66	1.0
2024		50		50	1.0
2025		50	50		1.0
2027	50		50		1.0
2030	50		50		1.0
2035	33	66			0.997452
2036	33	66			0.997452
2039	33		66		0.997452
2040			66	33	0.997452
2041	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain